Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGM entry

There is 1 chain in PDB entry 2VGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2VGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 33Right-handed alpha
Helix 2
2
A
123 135Right-handed alpha
Helix 3
3
A
135 140Right-handed alpha
Helix 4
4
A
187 203Right-handed alpha
Helix 5
5
A
218 235Right-handed alpha
Helix 6
6
A
236 241Right-handed alpha
Helix 7
7
A
256 264Right-handed alpha
Helix 8
8
A
269 277Right-handed alpha
Helix 9
9
A
277 293Right-handed alpha
Helix 10
10
A
301 311Right-handed alpha
Helix 11
11
A
321 325Right-handed alpha
Helix 12
12
A
330 344Right-handed alpha
Helix 13
13
A
356 364Right-handed alpha
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There are 3 sheets in PDB entry 2VGM. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
A
63 75anti-parallel
Strand 6
A
80 87anti-parallel
Strand 7
A
104 108anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 168first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
210 214parallel
Strand 5
A
246 249parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
348 352parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il