Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGN entry

There are 2 chains in PDB entry 2VGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 382
B
 MSE 1GLU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2VGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 33Right-handed alpha
Helix 2
2
A
123 133Right-handed alpha
Helix 3
3
A
185 203Right-handed alpha
Helix 4
4
A
218 234Right-handed alpha
Helix 5
5
A
236 241Right-handed alpha
Helix 6
6
A
242 244Right-handed 310
Helix 7
7
A
256 265Right-handed alpha
Helix 8
8
A
268 277Right-handed alpha
Helix 9
9
A
277 292Right-handed alpha
Helix 10
10
A
301 311Right-handed alpha
Helix 11
11
A
322 326Right-handed 310
Helix 12
12
A
328 345Right-handed alpha
Helix 13
13
A
356 365Right-handed alpha
Helix 14
14
B
24 33Right-handed alpha
Helix 15
15
B
123 134Right-handed alpha
Helix 16
16
B
135 139Right-handed 310
Helix 17
17
B
185 203Right-handed alpha
Helix 18
18
B
218 235Right-handed alpha
Helix 19
19
B
236 241Right-handed alpha
Helix 20
20
B
242 244Right-handed 310
Helix 21
21
B
256 265Right-handed alpha
Helix 22
22
B
268 277Right-handed alpha
Helix 23
23
B
277 293Right-handed alpha
Helix 24
24
B
301 310Right-handed alpha
Helix 25
25
B
322 325Right-handed 310
Helix 26
26
B
328 345Right-handed alpha
Helix 27
27
B
356 364Right-handed alpha
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There are 6 sheets in PDB entry 2VGN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
A
63 75anti-parallel
Strand 6
A
80 87anti-parallel
Strand 7
A
104 108anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 169first strand
Strand 2
A
151 157anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
210 215parallel
Strand 5
A
246 250parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
348 352parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
115 119anti-parallel
Strand 4
B
40 45anti-parallel
Strand 5
B
63 75anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
104 108anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 169first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
210 215parallel
Strand 5
B
246 250parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
368 372anti-parallel
Strand 3
B
314 320anti-parallel
Strand 4
B
348 352parallel
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