Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGX entry

There are 16 chains in PDB entry 2VGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21GLY 50
A
 TYR 52HIS 56
A
 VAL 58ILE 101
A
 GLU 103GLN 116
A
 GLY 118ASN 136
A
 PRO 138PHE 140
A
 GLU 142ILE 154
B
 GLY -5GLY 50
B
 TYR 52HIS 56
B
 VAL 58ILE 101
B
 GLU 103GLN 116
B
 GLY 118ASN 136
B
 PRO 138PHE 140
B
 GLU 142ILE 154
B
 LEU 156LEU 156
B
 GLU 159MET 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2VGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed alpha
Helix 2
2
A
33 49Right-handed alpha
Helix 3
3
A
52 65Right-handed alpha
Helix 4
4
A
70 83Right-handed alpha
Helix 5
5
A
86 99Right-handed alpha
Helix 6
6
A
104 117Right-handed alpha
Helix 7
7
A
120 134Right-handed alpha
Helix 8
8
A
140 153Right-handed alpha
Helix 9
9
B
22 29Right-handed alpha
Helix 10
10
B
37 49Right-handed alpha
Helix 11
11
B
52 65Right-handed alpha
Helix 12
12
B
70 83Right-handed alpha
Helix 13
13
B
86 99Right-handed alpha
Helix 14
14
B
104 117Right-handed alpha
Helix 15
15
B
120 134Right-handed alpha
Helix 16
16
B
141 159Right-handed alpha
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There are no sheets in PDB entry 2VGX
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il