Analysis of interatomic Contacts of Structural Units in PDB entry:
2VH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VH1 entry

There are 2 chains in PDB entry 2VH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58PRO 260
B
 SER 58PRO 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 80Right-handed alpha
Helix 2
2
A
86 90Right-handed 310
Helix 3
3
A
91 103Right-handed alpha
Helix 4
4
A
148 152Right-handed 310
Helix 5
5
A
166 183Right-handed alpha
Helix 6
6
A
215 237Right-handed alpha
Helix 7
7
B
70 80Right-handed alpha
Helix 8
8
B
86 90Right-handed 310
Helix 9
9
B
91 103Right-handed alpha
Helix 10
10
B
166 183Right-handed alpha
Helix 11
11
B
215 231Right-handed alpha
Helix 12
12
B
232 234Right-handed 310
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There are 3 sheets in PDB entry 2VH1. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
118 125parallel
Strand 3
A
106 114anti-parallel
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There are 18 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
128 132anti-parallel
Strand 4
A
159 161parallel
Strand 5
A
190 193parallel
Strand 6
A
199 202anti-parallel
Strand 7
A
208 212anti-parallel
Strand 8
A
239 248parallel
Strand 9
A
251 258anti-parallel
Strand 10
B
251 255anti-parallel
Strand 11
B
243 245anti-parallel
Strand 12
B
208 212parallel
Strand 13
B
199 202anti-parallel
Strand 14
B
190 193anti-parallel
Strand 15
B
159 161parallel
Strand 16
B
128 132parallel
Strand 17
B
136 139anti-parallel
Strand 18
B
144 145anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
118 125parallel
Strand 3
B
106 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il