Analysis of interatomic Contacts of Structural Units in PDB entry:
2VH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VH2 entry

There are 2 chains in PDB entry 2VH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 57GLY 259
B
 ARG 55GLY 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2VH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 80Right-handed alpha
Helix 2
2
A
91 100Right-handed alpha
Helix 3
3
A
166 184Right-handed alpha
Helix 4
4
A
216 226Right-handed alpha
Helix 5
5
B
71 80Right-handed alpha
Helix 6
6
B
92 99Right-handed alpha
Helix 7
7
B
166 184Right-handed alpha
Helix 8
8
B
215 227Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2VH2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
118 125parallel
Strand 3
A
106 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
144 145anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
190 192parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
210 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
250 253anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
119 125parallel
Strand 3
B
106 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
144 145anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
190 194parallel
Strand 3
B
198 201anti-parallel
Strand 4
B
209 212anti-parallel
Strand 5
B
240 242parallel
Strand 6
B
250 252anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il