Analysis of interatomic Contacts of Structural Units in PDB entry:
2VHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VHF entry

There are 2 chains in PDB entry 2VHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 583LYS 956
B
 GLY 583TYR 955
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2VHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
583 587Right-handed 310
Helix 2
2
A
600 612Right-handed alpha
Helix 3
3
A
617 623Right-handed alpha
Helix 4
4
A
632 643Right-handed alpha
Helix 5
5
A
644 651Right-handed alpha
Helix 6
6
A
655 670Right-handed alpha
Helix 7
7
A
681 691Right-handed alpha
Helix 8
8
A
729 742Right-handed alpha
Helix 9
9
A
777 780Right-handed 310
Helix 10
10
A
800 803Right-handed 310
Helix 11
11
A
817 825Right-handed alpha
Helix 12
12
A
826 831Right-handed 310
Helix 13
13
A
910 915Right-handed alpha
Helix 14
14
A
919 926Right-handed alpha
Helix 15
15
A
927 931Right-handed 310
Helix 16
16
A
934 941Right-handed alpha
Helix 17
17
A
950 952Right-handed 310
Helix 18
18
B
600 612Right-handed alpha
Helix 19
19
B
618 623Right-handed alpha
Helix 20
20
B
632 643Right-handed alpha
Helix 21
21
B
644 650Right-handed alpha
Helix 22
22
B
656 670Right-handed alpha
Helix 23
23
B
681 690Right-handed alpha
Helix 24
24
B
729 741Right-handed alpha
Helix 25
25
B
778 780Right-handed 310
Helix 26
26
B
800 803Right-handed 310
Helix 27
27
B
817 825Right-handed alpha
Helix 28
28
B
827 831Right-handed 310
Helix 29
29
B
843 847Right-handed 310
Helix 30
30
B
911 916Right-handed alpha
Helix 31
31
B
920 924Right-handed 310
Helix 32
32
B
935 941Right-handed alpha
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There are 10 sheets in PDB entry 2VHF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
905 908anti-parallel
Strand 3
A
885 889anti-parallel
Strand 4
A
871 877anti-parallel
Strand 5
A
859 868anti-parallel
Strand 6
A
774 775anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
905 908anti-parallel
Strand 3
A
885 889anti-parallel
Strand 4
A
871 877anti-parallel
Strand 5
A
859 868anti-parallel
Strand 6
A
944 948anti-parallel
Strand 7
A
751 755anti-parallel
Strand 8
A
715 716parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
653 654parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 712first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
743 745anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
815 816first strand
Strand 2
A
797 798anti-parallel
Strand 3
A
836 837anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 590first strand
Strand 2
B
905 908anti-parallel
Strand 3
B
885 889anti-parallel
Strand 4
B
871 877anti-parallel
Strand 5
B
858 868anti-parallel
Strand 6
B
774 776anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 590first strand
Strand 2
B
905 908anti-parallel
Strand 3
B
885 889anti-parallel
Strand 4
B
871 877anti-parallel
Strand 5
B
858 868anti-parallel
Strand 6
B
942 948anti-parallel
Strand 7
B
751 755anti-parallel
Strand 8
B
715 716parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 594first strand
Strand 2
B
653 654parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
710 712first strand
Strand 2
B
700 704anti-parallel
Strand 3
B
743 745anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
815 816first strand
Strand 2
B
797 798anti-parallel
Strand 3
B
836 837anti-parallel
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