Analysis of interatomic Contacts of Structural Units in PDB entry:
2VHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VHG entry

There are 4 chains in PDB entry 2VHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6GLN 131
B
 LEU 6GLN 132
C
 C -31 G -9
D
 C -31 T -8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VHG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 29Right-handed 310
Helix 2
2
A
34 51Right-handed alpha
Helix 3
3
A
76 96Right-handed alpha
Helix 4
4
A
97 102Right-handed alpha
Helix 5
5
A
123 130Right-handed alpha
Helix 6
6
B
26 29Right-handed 310
Helix 7
7
B
33 51Right-handed alpha
Helix 8
8
B
76 96Right-handed alpha
Helix 9
9
B
97 102Right-handed alpha
Helix 10
10
B
123 130Right-handed alpha
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There are 2 sheets in PDB entry 2VHG. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
13 16anti-parallel
Strand 3
B
111 116parallel
Strand 4
B
18 23anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
54 61anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 61first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
18 23anti-parallel
Strand 4
A
111 116anti-parallel
Strand 5
B
13 16parallel
Strand 6
B
8 9anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il