Analysis of interatomic Contacts of Structural Units in PDB entry:
2VHL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VHL entry

There are 2 chains in PDB entry 2VHL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ASP 394
B
 ALA 2ASP 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2VHL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 75Right-handed 310
Helix 2
2
A
76 87Right-handed alpha
Helix 3
3
A
88 90Right-handed 310
Helix 4
4
A
103 121Right-handed alpha
Helix 5
5
A
122 126Right-handed 310
Helix 6
6
A
141 145Right-handed 310
Helix 7
7
A
149 153Right-handed 310
Helix 8
8
A
157 168Right-handed alpha
Helix 9
9
A
178 182Right-handed 310
Helix 10
10
A
182 184Right-handed 310
Helix 11
11
A
185 194Right-handed alpha
Helix 12
12
A
206 216Right-handed alpha
Helix 13
13
A
236 245Right-handed alpha
Helix 14
14
A
260 272Right-handed alpha
Helix 15
15
A
320 333Right-handed alpha
Helix 16
16
A
335 344Right-handed alpha
Helix 17
17
A
344 352Right-handed alpha
Helix 18
18
B
73 75Right-handed 310
Helix 19
19
B
76 87Right-handed alpha
Helix 20
20
B
88 90Right-handed 310
Helix 21
21
B
103 120Right-handed alpha
Helix 22
22
B
122 126Right-handed 310
Helix 23
23
B
141 145Right-handed 310
Helix 24
24
B
149 153Right-handed 310
Helix 25
25
B
157 168Right-handed alpha
Helix 26
26
B
178 182Right-handed 310
Helix 27
27
B
182 184Right-handed 310
Helix 28
28
B
185 194Right-handed alpha
Helix 29
29
B
206 216Right-handed alpha
Helix 30
30
B
236 245Right-handed alpha
Helix 31
31
B
260 272Right-handed alpha
Helix 32
32
B
320 333Right-handed alpha
Helix 33
33
B
335 344Right-handed alpha
Helix 34
34
B
344 351Right-handed alpha
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There are 10 sheets in PDB entry 2VHL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
18 27anti-parallel
Strand 3
A
5 13anti-parallel
Strand 4
A
45 48parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
18 27anti-parallel
Strand 3
A
5 13anti-parallel
Strand 4
A
54 57parallel
Strand 5
A
368 371anti-parallel
Strand 6
A
377 382anti-parallel
Strand 7
A
385 389anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
92 98parallel
Strand 3
A
129 136parallel
Strand 4
A
172 177parallel
Strand 5
A
197 200parallel
Strand 6
A
220 221parallel
Strand 7
A
249 253parallel
Strand 8
A
276 279parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
298 303anti-parallel
Strand 3
A
306 308anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
18 27anti-parallel
Strand 3
B
5 13anti-parallel
Strand 4
B
45 48parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
18 27anti-parallel
Strand 3
B
5 13anti-parallel
Strand 4
B
54 57parallel
Strand 5
B
368 371anti-parallel
Strand 6
B
377 382anti-parallel
Strand 7
B
385 389anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
92 98parallel
Strand 3
B
129 136parallel
Strand 4
B
172 177parallel
Strand 5
B
197 200parallel
Strand 6
B
218 221parallel
Strand 7
B
249 253parallel
Strand 8
B
276 279parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 71anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 295first strand
Strand 2
B
298 303anti-parallel
Strand 3
B
306 308anti-parallel
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