Analysis of interatomic Contacts of Structural Units in PDB entry:
2VHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VHY entry

There are 2 chains in PDB entry 2VHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 371
B
 MET 1HIS 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2VHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 26Right-handed alpha
Helix 2
2
A
27 30Right-handed 310
Helix 3
3
A
46 52Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
78 82Right-handed 310
Helix 6
6
A
96 99Right-handed 310
Helix 7
7
A
100 109Right-handed alpha
Helix 8
8
A
130 148Right-handed alpha
Helix 9
9
A
150 154Right-handed 310
Helix 10
10
A
177 190Right-handed alpha
Helix 11
11
A
200 211Right-handed alpha
Helix 12
12
A
221 232Right-handed alpha
Helix 13
13
A
301 304Right-handed 310
Helix 14
14
A
305 335Right-handed alpha
Helix 15
15
A
336 341Right-handed alpha
Helix 16
16
A
355 360Right-handed alpha
Helix 17
17
B
19 28Right-handed alpha
Helix 18
18
B
40 44Right-handed 310
Helix 19
19
B
47 52Right-handed alpha
Helix 20
20
B
60 66Right-handed alpha
Helix 21
21
B
78 85Right-handed 310
Helix 22
22
B
96 99Right-handed 310
Helix 23
23
B
100 109Right-handed alpha
Helix 24
24
B
118 120Right-handed 310
Helix 25
25
B
130 148Right-handed alpha
Helix 26
26
B
150 154Right-handed 310
Helix 27
27
B
177 190Right-handed alpha
Helix 28
28
B
200 211Right-handed alpha
Helix 29
29
B
221 232Right-handed alpha
Helix 30
30
B
301 304Right-handed 310
Helix 31
31
B
305 335Right-handed alpha
Helix 32
32
B
336 341Right-handed alpha
Helix 33
33
B
352 359Right-handed alpha
Helix 34
34
B
365 371Right-handed 310
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There are 4 sheets in PDB entry 2VHY. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
32 36parallel
Strand 3
A
2 5parallel
Strand 4
A
70 72parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
Strand 7
A
343 346anti-parallel
Strand 8
A
349 350anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
193 198parallel
Strand 3
A
170 174parallel
Strand 4
A
234 237parallel
Strand 5
A
263 266parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
2 5parallel
Strand 3
B
70 72parallel
Strand 4
B
90 93parallel
Strand 5
B
113 116parallel
Strand 6
B
343 346anti-parallel
Strand 7
B
349 350anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
193 198parallel
Strand 3
B
170 174parallel
Strand 4
B
234 237parallel
Strand 5
B
263 266parallel
Strand 6
B
295 296parallel
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