Analysis of interatomic Contacts of Structural Units in PDB entry:
2VI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VI5 entry

There are 10 chains in PDB entry 2VI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11SER 160
B
 ASP 14SER 160
C
 ALA 15SER 160
D
 LEU 13SER 160
E
 LEU 10SER 160
F
 ASP 14SER 160
G
 ASP 14SER 160
H
 LEU 13SER 160
I
 PRO 11SER 160
J
 ALA 15SER 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2VI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 46Right-handed alpha
Helix 2
2
A
58 60Right-handed 310
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
88 109Right-handed alpha
Helix 5
5
A
121 127Right-handed alpha
Helix 6
6
A
137 157Right-handed alpha
Helix 7
7
B
28 46Right-handed alpha
Helix 8
8
B
58 60Right-handed 310
Helix 9
9
B
61 70Right-handed alpha
Helix 10
10
B
88 109Right-handed alpha
Helix 11
11
B
121 127Right-handed alpha
Helix 12
12
B
137 157Right-handed alpha
Helix 13
13
C
28 46Right-handed alpha
Helix 14
14
C
58 60Right-handed 310
Helix 15
15
C
61 70Right-handed alpha
Helix 16
16
C
88 109Right-handed alpha
Helix 17
17
C
121 127Right-handed alpha
Helix 18
18
C
137 157Right-handed alpha
Helix 19
19
D
28 46Right-handed alpha
Helix 20
20
D
58 60Right-handed 310
Helix 21
21
D
61 70Right-handed alpha
Helix 22
22
D
88 109Right-handed alpha
Helix 23
23
D
121 127Right-handed alpha
Helix 24
24
D
137 157Right-handed alpha
Helix 25
25
E
28 46Right-handed alpha
Helix 26
26
E
58 60Right-handed 310
Helix 27
27
E
61 70Right-handed alpha
Helix 28
28
E
88 109Right-handed alpha
Helix 29
29
E
121 127Right-handed alpha
Helix 30
30
E
137 157Right-handed alpha
Helix 31
31
F
28 46Right-handed alpha
Helix 32
32
F
58 60Right-handed 310
Helix 33
33
F
61 70Right-handed alpha
Helix 34
34
F
88 109Right-handed alpha
Helix 35
35
F
121 127Right-handed alpha
Helix 36
36
F
137 157Right-handed alpha
Helix 37
37
G
28 46Right-handed alpha
Helix 38
38
G
58 60Right-handed 310
Helix 39
39
G
61 70Right-handed alpha
Helix 40
40
G
88 109Right-handed alpha
Helix 41
41
G
121 127Right-handed alpha
Helix 42
42
G
137 157Right-handed alpha
Helix 43
43
H
28 46Right-handed alpha
Helix 44
44
H
58 60Right-handed 310
Helix 45
45
H
61 70Right-handed alpha
Helix 46
46
H
88 109Right-handed alpha
Helix 47
47
H
121 127Right-handed alpha
Helix 48
48
H
137 157Right-handed alpha
Helix 49
49
I
28 46Right-handed alpha
Helix 50
50
I
58 60Right-handed 310
Helix 51
51
I
61 70Right-handed alpha
Helix 52
52
I
88 109Right-handed alpha
Helix 53
53
I
121 127Right-handed alpha
Helix 54
54
I
137 157Right-handed alpha
Helix 55
55
J
28 46Right-handed alpha
Helix 56
56
J
58 60Right-handed 310
Helix 57
57
J
61 70Right-handed alpha
Helix 58
58
J
88 109Right-handed alpha
Helix 59
59
J
121 127Right-handed alpha
Helix 60
60
J
137 157Right-handed alpha
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There are 10 sheets in PDB entry 2VI5. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
20 24parallel
Strand 3
A
75 83parallel
Strand 4
A
112 119parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
20 25parallel
Strand 3
B
75 83parallel
Strand 4
B
112 119parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
20 25parallel
Strand 3
C
75 83parallel
Strand 4
C
112 119parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
20 25parallel
Strand 3
D
75 83parallel
Strand 4
D
112 119parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 56first strand
Strand 2
E
20 25parallel
Strand 3
E
75 83parallel
Strand 4
E
112 119parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 56first strand
Strand 2
F
20 25parallel
Strand 3
F
75 83parallel
Strand 4
F
112 119parallel
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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
52 56first strand
Strand 2
G
20 25parallel
Strand 3
G
75 83parallel
Strand 4
G
112 119parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
52 56first strand
Strand 2
H
20 25parallel
Strand 3
H
75 83parallel
Strand 4
H
112 119parallel
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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
52 56first strand
Strand 2
I
20 25parallel
Strand 3
I
75 83parallel
Strand 4
I
112 119parallel
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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
52 56first strand
Strand 2
J
20 25parallel
Strand 3
J
75 83parallel
Strand 4
J
112 119parallel
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