Analysis of interatomic Contacts of Structural Units in PDB entry:
2VI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VI7 entry

There are 3 chains in PDB entry 2VI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ARG 170
B
 PRO 6ARG 169
C
 SER 5ARG 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2VI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 16Right-handed 310
Helix 2
2
A
17 26Right-handed alpha
Helix 3
3
A
27 32Right-handed alpha
Helix 4
4
A
41 50Right-handed alpha
Helix 5
5
A
80 84Right-handed 310
Helix 6
6
A
101 117Right-handed alpha
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
B
14 16Right-handed 310
Helix 9
9
B
17 26Right-handed alpha
Helix 10
10
B
27 32Right-handed alpha
Helix 11
11
B
41 51Right-handed alpha
Helix 12
12
B
80 84Right-handed 310
Helix 13
13
B
101 117Right-handed alpha
Helix 14
14
B
131 141Right-handed alpha
Helix 15
15
C
14 16Right-handed 310
Helix 16
16
C
17 26Right-handed alpha
Helix 17
17
C
27 32Right-handed alpha
Helix 18
18
C
41 52Right-handed alpha
Helix 19
19
C
80 84Right-handed 310
Helix 20
20
C
101 117Right-handed alpha
Helix 21
21
C
131 141Right-handed alpha
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There are 6 sheets in PDB entry 2VI7. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
58 65anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
94 95anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
58 65anti-parallel
Strand 3
A
68 77anti-parallel
Strand 4
A
86 88anti-parallel
Strand 5
A
122 128parallel
Strand 6
A
158 168anti-parallel
Strand 7
A
144 155anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
68 77anti-parallel
Strand 4
B
94 95anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
68 77anti-parallel
Strand 4
B
86 88anti-parallel
Strand 5
B
122 128parallel
Strand 6
B
158 167anti-parallel
Strand 7
B
144 155anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
58 65anti-parallel
Strand 3
C
68 77anti-parallel
Strand 4
C
94 95anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
58 65anti-parallel
Strand 3
C
68 77anti-parallel
Strand 4
C
86 88anti-parallel
Strand 5
C
122 128parallel
Strand 6
C
158 168anti-parallel
Strand 7
C
144 155anti-parallel
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