Analysis of interatomic Contacts of Structural Units in PDB entry:
2VIG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VIG entry

There are 8 chains in PDB entry 2VIG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	SER 412
B	LEU 34	ARG 411
C	LEU 34	PHE 418
D	LEU 34	ALA 413
E	LEU 34	ALA 413
F	LEU 34	ALA 413
G	LEU 34	ARG 411
H	LEU 34	ALA 413

There are130 helices in PDB entry 2VIG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	53	Right-handed alpha
Helix 2	2	A	56	64	Right-handed alpha
Helix 3	3	A	67	78	Right-handed alpha
Helix 4	4	A	85	89	Right-handed 310
Helix 5	5	A	94	109	Right-handed alpha
Helix 6	6	A	109	122	Right-handed alpha
Helix 7	7	A	123	131	Right-handed alpha
Helix 8	8	A	132	140	Right-handed alpha
Helix 9	9	A	141	144	Right-handed 310
Helix 10	10	A	162	166	Right-handed 310
Helix 11	11	A	259	297	Right-handed alpha
Helix 12	12	A	307	337	Right-handed alpha
Helix 13	13	A	341	368	Right-handed alpha
Helix 14	14	A	369	372	Right-handed 310
Helix 15	15	A	377	389	Right-handed alpha
Helix 16	16	A	394	412	Right-handed alpha
Helix 17	17	B	35	53	Right-handed alpha
Helix 18	18	B	56	63	Right-handed alpha
Helix 19	19	B	67	78	Right-handed alpha
Helix 20	20	B	85	89	Right-handed 310
Helix 21	21	B	94	109	Right-handed alpha
Helix 22	22	B	109	122	Right-handed alpha
Helix 23	23	B	123	131	Right-handed alpha
Helix 24	24	B	132	140	Right-handed alpha
Helix 25	25	B	141	144	Right-handed 310
Helix 26	26	B	162	166	Right-handed 310
Helix 27	27	B	259	297	Right-handed alpha
Helix 28	28	B	307	337	Right-handed alpha
Helix 29	29	B	341	368	Right-handed alpha
Helix 30	30	B	369	372	Right-handed 310
Helix 31	31	B	377	388	Right-handed alpha
Helix 32	32	B	394	411	Right-handed alpha
Helix 33	33	C	35	53	Right-handed alpha
Helix 34	34	C	56	64	Right-handed alpha
Helix 35	35	C	67	78	Right-handed alpha
Helix 36	36	C	85	89	Right-handed 310
Helix 37	37	C	94	109	Right-handed alpha
Helix 38	38	C	109	122	Right-handed alpha
Helix 39	39	C	123	131	Right-handed alpha
Helix 40	40	C	132	140	Right-handed alpha
Helix 41	41	C	141	144	Right-handed 310
Helix 42	42	C	162	166	Right-handed 310
Helix 43	43	C	259	297	Right-handed alpha
Helix 44	44	C	307	337	Right-handed alpha
Helix 45	45	C	341	368	Right-handed alpha
Helix 46	46	C	369	372	Right-handed 310
Helix 47	47	C	377	386	Right-handed alpha
Helix 48	48	C	387	390	Right-handed 310
Helix 49	49	C	394	416	Right-handed alpha
Helix 50	50	D	35	53	Right-handed alpha
Helix 51	51	D	56	64	Right-handed alpha
Helix 52	52	D	67	77	Right-handed alpha
Helix 53	53	D	85	89	Right-handed 310
Helix 54	54	D	94	109	Right-handed alpha
Helix 55	55	D	109	122	Right-handed alpha
Helix 56	56	D	123	131	Right-handed alpha
Helix 57	57	D	132	140	Right-handed alpha
Helix 58	58	D	141	144	Right-handed 310
Helix 59	59	D	162	166	Right-handed 310
Helix 60	60	D	259	297	Right-handed alpha
Helix 61	61	D	307	337	Right-handed alpha
Helix 62	62	D	341	368	Right-handed alpha
Helix 63	63	D	369	372	Right-handed 310
Helix 64	64	D	377	388	Right-handed alpha
Helix 65	65	D	394	413	Right-handed alpha
Helix 66	66	E	35	53	Right-handed alpha
Helix 67	67	E	56	64	Right-handed alpha
Helix 68	68	E	67	78	Right-handed alpha
Helix 69	69	E	85	89	Right-handed 310
Helix 70	70	E	94	109	Right-handed alpha
Helix 71	71	E	109	122	Right-handed alpha
Helix 72	72	E	123	131	Right-handed alpha
Helix 73	73	E	132	140	Right-handed alpha
Helix 74	74	E	141	144	Right-handed 310
Helix 75	75	E	162	166	Right-handed 310
Helix 76	76	E	259	297	Right-handed alpha
Helix 77	77	E	307	337	Right-handed alpha
Helix 78	78	E	341	368	Right-handed alpha
Helix 79	79	E	369	372	Right-handed 310
Helix 80	80	E	377	388	Right-handed alpha
Helix 81	81	E	394	413	Right-handed alpha
Helix 82	82	F	35	53	Right-handed alpha
Helix 83	83	F	56	64	Right-handed alpha
Helix 84	84	F	67	78	Right-handed alpha
Helix 85	85	F	85	89	Right-handed 310
Helix 86	86	F	94	109	Right-handed alpha
Helix 87	87	F	109	122	Right-handed alpha
Helix 88	88	F	123	131	Right-handed alpha
Helix 89	89	F	132	140	Right-handed alpha
Helix 90	90	F	141	144	Right-handed 310
Helix 91	91	F	162	166	Right-handed 310
Helix 92	92	F	259	297	Right-handed alpha
Helix 93	93	F	307	337	Right-handed alpha
Helix 94	94	F	341	368	Right-handed alpha
Helix 95	95	F	369	372	Right-handed 310
Helix 96	96	F	377	388	Right-handed alpha
Helix 97	97	F	394	413	Right-handed alpha
Helix 98	98	G	35	53	Right-handed alpha
Helix 99	99	G	56	63	Right-handed alpha
Helix 100	100	G	67	77	Right-handed alpha
Helix 101	101	G	85	89	Right-handed 310
Helix 102	102	G	94	109	Right-handed alpha
Helix 103	103	G	109	122	Right-handed alpha
Helix 104	104	G	123	131	Right-handed alpha
Helix 105	105	G	132	140	Right-handed alpha
Helix 106	106	G	141	144	Right-handed 310
Helix 107	107	G	162	166	Right-handed 310
Helix 108	108	G	206	208	Right-handed 310
Helix 109	109	G	259	297	Right-handed alpha
Helix 110	110	G	307	337	Right-handed alpha
Helix 111	111	G	341	368	Right-handed alpha
Helix 112	112	G	369	372	Right-handed 310
Helix 113	113	G	377	389	Right-handed alpha
Helix 114	114	G	394	411	Right-handed alpha
Helix 115	115	H	35	53	Right-handed alpha
Helix 116	116	H	56	64	Right-handed alpha
Helix 117	117	H	67	77	Right-handed alpha
Helix 118	118	H	85	89	Right-handed 310
Helix 119	119	H	94	109	Right-handed alpha
Helix 120	120	H	109	122	Right-handed alpha
Helix 121	121	H	123	131	Right-handed alpha
Helix 122	122	H	132	140	Right-handed alpha
Helix 123	123	H	141	144	Right-handed 310
Helix 124	124	H	162	166	Right-handed 310
Helix 125	125	H	259	297	Right-handed alpha
Helix 126	126	H	307	337	Right-handed alpha
Helix 127	127	H	341	368	Right-handed alpha
Helix 128	128	H	369	372	Right-handed 310
Helix 129	129	H	377	389	Right-handed alpha
Helix 130	130	H	394	413	Right-handed alpha

There are 24 sheets in PDB entry 2VIG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB, HC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	194	200	parallel
Strand 3	A	210	216	anti-parallel
Strand 4	A	253	254	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	176	187	anti-parallel
Strand 3	A	238	249	anti-parallel
Strand 4	A	222	224	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	302	303	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	194	200	parallel
Strand 3	B	210	216	anti-parallel
Strand 4	B	253	254	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	176	187	anti-parallel
Strand 3	B	238	249	anti-parallel
Strand 4	B	222	224	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	194	200	parallel
Strand 3	C	210	216	anti-parallel
Strand 4	C	253	254	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	176	187	anti-parallel
Strand 3	C	238	249	anti-parallel
Strand 4	C	222	224	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	302	303	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	194	200	parallel
Strand 3	D	210	216	anti-parallel
Strand 4	D	253	254	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	176	187	anti-parallel
Strand 3	D	238	249	anti-parallel
Strand 4	D	222	224	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	302	303	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	153	first strand
Strand 2	E	194	200	parallel
Strand 3	E	210	216	anti-parallel
Strand 4	E	253	254	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	176	187	anti-parallel
Strand 3	E	238	249	anti-parallel
Strand 4	E	222	224	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	299	first strand
Strand 2	E	302	303	anti-parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	153	first strand
Strand 2	F	194	200	parallel
Strand 3	F	210	216	anti-parallel
Strand 4	F	253	254	anti-parallel

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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	176	187	anti-parallel
Strand 3	F	238	249	anti-parallel
Strand 4	F	222	224	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	299	first strand
Strand 2	F	302	303	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	153	first strand
Strand 2	G	194	200	parallel
Strand 3	G	210	216	anti-parallel
Strand 4	G	253	254	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	176	187	anti-parallel
Strand 3	G	238	249	anti-parallel
Strand 4	G	222	224	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	299	first strand
Strand 2	G	302	303	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	153	first strand
Strand 2	H	194	200	parallel
Strand 3	H	210	216	anti-parallel
Strand 4	H	253	254	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	173	first strand
Strand 2	H	176	187	anti-parallel
Strand 3	H	238	249	anti-parallel
Strand 4	H	222	224	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	298	299	first strand
Strand 2	H	302	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VIG

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VIG