Analysis of interatomic Contacts of Structural Units in PDB entry:
2VIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VIJ entry

There is 1 chain in PDB entry 2VIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 62ILE 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2VIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
114 118Right-handed 310
Helix 2
2
A
184 188Right-handed 310
Helix 3
3
A
196 205Right-handed alpha
Helix 4
4
A
241 243Right-handed 310
Helix 5
5
A
277 283Right-handed 310
Helix 6
6
A
299 313Right-handed alpha
Helix 7
7
A
319 324Right-handed alpha
Helix 8
8
A
337 341Right-handed 310
Helix 9
9
A
362 366Right-handed alpha
Helix 10
10
A
372 376Right-handed 310
Helix 11
11
A
395 400Right-handed alpha
Helix 12
12
A
408 410Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 2VIJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 131first strand
Strand 2
A
136 147anti-parallel
Strand 3
A
75 81anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 131first strand
Strand 2
A
136 147anti-parallel
Strand 3
A
155 167anti-parallel
Strand 4
A
99 102parallel
Strand 5
A
178 181anti-parallel
Strand 6
A
86 93parallel
Strand 7
A
75 81anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
286 288anti-parallel
Strand 3
A
392 394parallel
Strand 4
A
295 298anti-parallel
Strand 5
A
385 388parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
355 361anti-parallel
Strand 5
A
430 436anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
367 369anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il