Analysis of interatomic Contacts of Structural Units in PDB entry:
2VJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VJQ entry

There are 4 chains in PDB entry 2VJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 428
B
 THR 2VAL 428
C
 THR 2VAL 428
D
 THR 2VAL 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 2VJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
43 48Right-handed 310
Helix 3
3
A
57 62Right-handed alpha
Helix 4
4
A
76 90Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
108 116Right-handed alpha
Helix 7
7
A
139 147Right-handed alpha
Helix 8
8
A
149 153Right-handed 310
Helix 9
9
A
168 191Right-handed alpha
Helix 10
10
A
200 208Right-handed alpha
Helix 11
11
A
208 222Right-handed alpha
Helix 12
12
A
227 231Right-handed 310
Helix 13
13
A
244 248Right-handed 310
Helix 14
14
A
285 287Right-handed 310
Helix 15
15
A
288 296Right-handed alpha
Helix 16
16
A
298 302Right-handed 310
Helix 17
17
A
309 314Right-handed alpha
Helix 18
18
A
316 327Right-handed alpha
Helix 19
19
A
332 343Right-handed alpha
Helix 20
20
A
352 358Right-handed alpha
Helix 21
21
A
359 365Right-handed alpha
Helix 22
22
A
404 412Right-handed alpha
Helix 23
23
A
415 425Right-handed alpha
Helix 24
24
B
17 29Right-handed alpha
Helix 25
25
B
43 48Right-handed 310
Helix 26
26
B
57 64Right-handed alpha
Helix 27
27
B
76 90Right-handed alpha
Helix 28
28
B
100 105Right-handed alpha
Helix 29
29
B
108 116Right-handed alpha
Helix 30
30
B
139 147Right-handed alpha
Helix 31
31
B
149 153Right-handed 310
Helix 32
32
B
168 191Right-handed alpha
Helix 33
33
B
200 208Right-handed alpha
Helix 34
34
B
208 222Right-handed alpha
Helix 35
35
B
227 231Right-handed 310
Helix 36
36
B
244 248Right-handed 310
Helix 37
37
B
288 296Right-handed alpha
Helix 38
38
B
299 304Right-handed alpha
Helix 39
39
B
309 314Right-handed alpha
Helix 40
40
B
316 327Right-handed alpha
Helix 41
41
B
332 342Right-handed alpha
Helix 42
42
B
352 359Right-handed alpha
Helix 43
43
B
359 365Right-handed alpha
Helix 44
44
B
404 412Right-handed alpha
Helix 45
45
B
415 425Right-handed alpha
Helix 46
46
C
17 29Right-handed alpha
Helix 47
47
C
43 48Right-handed 310
Helix 48
48
C
57 65Right-handed alpha
Helix 49
49
C
76 90Right-handed alpha
Helix 50
50
C
100 105Right-handed alpha
Helix 51
51
C
108 116Right-handed alpha
Helix 52
52
C
139 147Right-handed alpha
Helix 53
53
C
168 191Right-handed alpha
Helix 54
54
C
200 208Right-handed alpha
Helix 55
55
C
208 222Right-handed alpha
Helix 56
56
C
227 231Right-handed 310
Helix 57
57
C
285 287Right-handed 310
Helix 58
58
C
288 296Right-handed alpha
Helix 59
59
C
298 302Right-handed 310
Helix 60
60
C
309 314Right-handed alpha
Helix 61
61
C
316 327Right-handed alpha
Helix 62
62
C
332 343Right-handed alpha
Helix 63
63
C
352 358Right-handed alpha
Helix 64
64
C
359 365Right-handed alpha
Helix 65
65
C
404 412Right-handed alpha
Helix 66
66
C
415 425Right-handed alpha
Helix 67
67
D
17 29Right-handed alpha
Helix 68
68
D
43 48Right-handed 310
Helix 69
69
D
57 65Right-handed alpha
Helix 70
70
D
76 88Right-handed alpha
Helix 71
71
D
100 105Right-handed alpha
Helix 72
72
D
108 116Right-handed alpha
Helix 73
73
D
139 147Right-handed alpha
Helix 74
74
D
149 153Right-handed 310
Helix 75
75
D
168 191Right-handed alpha
Helix 76
76
D
200 208Right-handed alpha
Helix 77
77
D
208 222Right-handed alpha
Helix 78
78
D
227 231Right-handed 310
Helix 79
79
D
244 248Right-handed 310
Helix 80
80
D
288 296Right-handed alpha
Helix 81
81
D
299 304Right-handed alpha
Helix 82
82
D
309 314Right-handed alpha
Helix 83
83
D
316 327Right-handed alpha
Helix 84
84
D
332 342Right-handed alpha
Helix 85
85
D
352 358Right-handed alpha
Helix 86
86
D
359 365Right-handed alpha
Helix 87
87
D
404 412Right-handed alpha
Helix 88
88
D
415 425Right-handed alpha
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There are 12 sheets in PDB entry 2VJQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, CA, CB, CC, CD, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
32 38parallel
Strand 3
A
9 12parallel
Strand 4
A
92 95parallel
Strand 5
A
120 125parallel
Strand 6
A
195 199parallel
Strand 7
B
386 388anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
347 349anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
379 382anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
B
195 199anti-parallel
Strand 3
B
120 125parallel
Strand 4
B
92 95parallel
Strand 5
B
9 12parallel
Strand 6
B
32 38parallel
Strand 7
B
68 72parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 268first strand
Strand 2
B
279 283anti-parallel
Strand 3
B
347 349anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 371first strand
Strand 2
B
379 382anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
32 38parallel
Strand 3
C
9 12parallel
Strand 4
C
92 95parallel
Strand 5
C
120 125parallel
Strand 6
C
195 199parallel
Strand 7
D
386 388anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 268first strand
Strand 2
C
279 283anti-parallel
Strand 3
C
347 349anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 371first strand
Strand 2
C
379 382anti-parallel
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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
386 388first strand
Strand 2
D
195 199anti-parallel
Strand 3
D
120 125parallel
Strand 4
D
92 95parallel
Strand 5
D
9 12parallel
Strand 6
D
32 38parallel
Strand 7
D
68 72parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 268first strand
Strand 2
D
279 283anti-parallel
Strand 3
D
347 349anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 371first strand
Strand 2
D
379 382anti-parallel
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