Analysis of interatomic Contacts of Structural Units in PDB entry:
2VJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VJY entry

There are 4 chains in PDB entry 2VJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 563
B	SER 2	ASN 563
C	SER 2	ASN 563
D	SER 2	ASN 563

There are118 helices in PDB entry 2VJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	17	Right-handed alpha
Helix 2	2	A	27	29	Right-handed 310
Helix 3	3	A	30	39	Right-handed alpha
Helix 4	4	A	50	66	Right-handed alpha
Helix 5	5	A	75	91	Right-handed alpha
Helix 6	6	A	103	109	Right-handed alpha
Helix 7	7	A	123	131	Right-handed alpha
Helix 8	8	A	144	160	Right-handed alpha
Helix 9	9	A	170	173	Right-handed 310
Helix 10	10	A	179	183	Right-handed 310
Helix 11	11	A	193	211	Right-handed alpha
Helix 12	12	A	219	225	Right-handed alpha
Helix 13	13	A	227	239	Right-handed alpha
Helix 14	14	A	264	268	Right-handed 310
Helix 15	15	A	269	278	Right-handed alpha
Helix 16	16	A	325	341	Right-handed alpha
Helix 17	17	A	366	378	Right-handed alpha
Helix 18	18	A	389	395	Right-handed alpha
Helix 19	19	A	396	398	Right-handed 310
Helix 20	20	A	416	433	Right-handed alpha
Helix 21	21	A	444	451	Right-handed alpha
Helix 22	22	A	453	460	Right-handed alpha
Helix 23	23	A	474	481	Right-handed alpha
Helix 24	24	A	485	489	Right-handed 310
Helix 25	25	A	494	496	Right-handed 310
Helix 26	26	A	497	502	Right-handed alpha
Helix 27	27	A	514	523	Right-handed alpha
Helix 28	28	A	546	562	Right-handed alpha
Helix 29	29	B	6	17	Right-handed alpha
Helix 30	30	B	30	35	Right-handed alpha
Helix 31	31	B	36	40	Right-handed 310
Helix 32	32	B	50	66	Right-handed alpha
Helix 33	33	B	75	92	Right-handed alpha
Helix 34	34	B	103	109	Right-handed alpha
Helix 35	35	B	123	131	Right-handed alpha
Helix 36	36	B	144	160	Right-handed alpha
Helix 37	37	B	179	183	Right-handed 310
Helix 38	38	B	193	211	Right-handed alpha
Helix 39	39	B	219	225	Right-handed alpha
Helix 40	40	B	227	239	Right-handed alpha
Helix 41	41	B	246	249	Right-handed 310
Helix 42	42	B	264	268	Right-handed 310
Helix 43	43	B	269	278	Right-handed alpha
Helix 44	44	B	291	295	Right-handed 310
Helix 45	45	B	325	335	Right-handed alpha
Helix 46	46	B	336	342	Right-handed alpha
Helix 47	47	B	366	378	Right-handed alpha
Helix 48	48	B	389	396	Right-handed alpha
Helix 49	49	B	416	433	Right-handed alpha
Helix 50	50	B	444	451	Right-handed alpha
Helix 51	51	B	452	460	Right-handed alpha
Helix 52	52	B	474	481	Right-handed alpha
Helix 53	53	B	485	489	Right-handed 310
Helix 54	54	B	494	496	Right-handed 310
Helix 55	55	B	497	502	Right-handed alpha
Helix 56	56	B	514	523	Right-handed alpha
Helix 57	57	B	546	562	Right-handed alpha
Helix 58	58	C	6	17	Right-handed alpha
Helix 59	59	C	30	36	Right-handed alpha
Helix 60	60	C	37	40	Right-handed 310
Helix 61	61	C	50	66	Right-handed alpha
Helix 62	62	C	75	81	Right-handed alpha
Helix 63	63	C	81	91	Right-handed alpha
Helix 64	64	C	103	109	Right-handed alpha
Helix 65	65	C	123	131	Right-handed alpha
Helix 66	66	C	141	143	Right-handed 310
Helix 67	67	C	144	160	Right-handed alpha
Helix 68	68	C	179	183	Right-handed 310
Helix 69	69	C	193	210	Right-handed alpha
Helix 70	70	C	219	225	Right-handed alpha
Helix 71	71	C	227	239	Right-handed alpha
Helix 72	72	C	264	268	Right-handed 310
Helix 73	73	C	269	278	Right-handed alpha
Helix 74	74	C	291	295	Right-handed 310
Helix 75	75	C	325	341	Right-handed alpha
Helix 76	76	C	366	378	Right-handed alpha
Helix 77	77	C	389	395	Right-handed alpha
Helix 78	78	C	396	398	Right-handed 310
Helix 79	79	C	416	433	Right-handed alpha
Helix 80	80	C	444	451	Right-handed alpha
Helix 81	81	C	453	460	Right-handed alpha
Helix 82	82	C	474	481	Right-handed alpha
Helix 83	83	C	485	489	Right-handed 310
Helix 84	84	C	494	496	Right-handed 310
Helix 85	85	C	497	502	Right-handed alpha
Helix 86	86	C	514	523	Right-handed alpha
Helix 87	87	C	546	560	Right-handed alpha
Helix 88	88	D	6	17	Right-handed alpha
Helix 89	89	D	27	29	Right-handed 310
Helix 90	90	D	30	36	Right-handed alpha
Helix 91	91	D	37	40	Right-handed 310
Helix 92	92	D	50	66	Right-handed alpha
Helix 93	93	D	75	92	Right-handed alpha
Helix 94	94	D	103	109	Right-handed alpha
Helix 95	95	D	123	131	Right-handed alpha
Helix 96	96	D	144	160	Right-handed alpha
Helix 97	97	D	179	183	Right-handed 310
Helix 98	98	D	193	210	Right-handed alpha
Helix 99	99	D	219	225	Right-handed alpha
Helix 100	100	D	227	239	Right-handed alpha
Helix 101	101	D	264	268	Right-handed 310
Helix 102	102	D	269	278	Right-handed alpha
Helix 103	103	D	325	335	Right-handed alpha
Helix 104	104	D	336	341	Right-handed alpha
Helix 105	105	D	366	378	Right-handed alpha
Helix 106	106	D	389	395	Right-handed alpha
Helix 107	107	D	396	398	Right-handed 310
Helix 108	108	D	416	433	Right-handed alpha
Helix 109	109	D	444	449	Right-handed alpha
Helix 110	110	D	450	452	Right-handed 310
Helix 111	111	D	453	460	Right-handed alpha
Helix 112	112	D	474	481	Right-handed alpha
Helix 113	113	D	485	489	Right-handed 310
Helix 114	114	D	494	496	Right-handed 310
Helix 115	115	D	497	502	Right-handed alpha
Helix 116	116	D	514	523	Right-handed alpha
Helix 117	117	D	524	529	Right-handed alpha
Helix 118	118	D	546	561	Right-handed alpha

There are 16 sheets in PDB entry 2VJY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	175	177	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	21	24	parallel
Strand 3	A	68	73	parallel
Strand 4	A	95	101	parallel
Strand 5	A	163	168	parallel
Strand 6	A	136	138	parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	242	244	parallel
Strand 3	A	214	218	parallel
Strand 4	A	281	285	parallel
Strand 5	A	306	309	parallel
Strand 6	A	313	316	anti-parallel
Strand 7	A	319	322	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	383	386	parallel
Strand 3	A	438	443	parallel
Strand 4	A	465	470	parallel
Strand 5	A	533	539	parallel
Strand 6	A	507	512	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	175	177	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	21	24	parallel
Strand 3	B	68	73	parallel
Strand 4	B	95	101	parallel
Strand 5	B	163	168	parallel
Strand 6	B	135	138	parallel

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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	242	244	parallel
Strand 3	B	214	218	parallel
Strand 4	B	281	285	parallel
Strand 5	B	306	309	parallel
Strand 6	B	313	316	anti-parallel
Strand 7	B	319	322	anti-parallel

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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	383	386	parallel
Strand 3	B	438	443	parallel
Strand 4	B	465	470	parallel
Strand 5	B	533	539	parallel
Strand 6	B	507	512	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	175	177	anti-parallel

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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	21	24	parallel
Strand 3	C	68	73	parallel
Strand 4	C	95	101	parallel
Strand 5	C	163	168	parallel
Strand 6	C	135	138	parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	242	244	parallel
Strand 3	C	214	218	parallel
Strand 4	C	281	285	parallel
Strand 5	C	306	309	parallel
Strand 6	C	313	316	anti-parallel
Strand 7	C	319	322	anti-parallel

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There are 6 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	407	first strand
Strand 2	C	383	386	parallel
Strand 3	C	438	443	parallel
Strand 4	C	465	470	parallel
Strand 5	C	533	539	parallel
Strand 6	C	507	512	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	175	177	anti-parallel

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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	21	24	parallel
Strand 3	D	68	73	parallel
Strand 4	D	95	101	parallel
Strand 5	D	163	168	parallel
Strand 6	D	135	138	parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	262	first strand
Strand 2	D	242	244	parallel
Strand 3	D	214	218	parallel
Strand 4	D	281	285	parallel
Strand 5	D	306	309	parallel
Strand 6	D	313	316	anti-parallel
Strand 7	D	319	322	anti-parallel

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There are 6 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	383	386	parallel
Strand 3	D	438	443	parallel
Strand 4	D	465	470	parallel
Strand 5	D	533	539	parallel
Strand 6	D	507	512	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VJY