Analysis of interatomic Contacts of Structural Units in PDB entry:
2VK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VK2 entry

There is 1 chain in PDB entry 2VK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TYR 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 32Right-handed alpha
Helix 2
2
A
43 58Right-handed alpha
Helix 3
3
A
72 82Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
108 125Right-handed alpha
Helix 6
6
A
140 154Right-handed alpha
Helix 7
7
A
171 186Right-handed alpha
Helix 8
8
A
199 213Right-handed alpha
Helix 9
9
A
229 238Right-handed alpha
Helix 10
10
A
251 266Right-handed alpha
Helix 11
11
A
281 283Right-handed 310
Helix 12
12
A
284 292Right-handed alpha
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There are 2 sheets in PDB entry 2VK2. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
4 9parallel
Strand 3
A
61 64parallel
Strand 4
A
86 89parallel
Strand 5
A
103 106parallel
Strand 6
A
272 274parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 167first strand
Strand 2
A
129 135parallel
Strand 3
A
194 197parallel
Strand 4
A
222 227parallel
Strand 5
A
243 246parallel
Strand 6
A
278 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il