Analysis of interatomic Contacts of Structural Units in PDB entry:
2VK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VK9 entry

There is 1 chain in PDB entry 2VK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2LYS 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2VK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 36Right-handed alpha
Helix 2
2
A
41 63Right-handed alpha
Helix 3
3
A
68 91Right-handed alpha
Helix 4
4
A
110 124Right-handed alpha
Helix 5
5
A
139 158Right-handed alpha
Helix 6
6
A
159 164Right-handed 310
Helix 7
7
A
172 196Right-handed alpha
Helix 8
8
A
200 214Right-handed alpha
Helix 9
9
A
216 235Right-handed alpha
Helix 10
10
A
240 242Right-handed 310
Helix 11
11
A
246 259Right-handed alpha
Helix 12
12
A
262 279Right-handed alpha
Helix 13
13
A
292 299Right-handed 310
Helix 14
14
A
306 322Right-handed alpha
Helix 15
15
A
337 350Right-handed alpha
Helix 16
16
A
352 357Right-handed alpha
Helix 17
17
A
395 423Right-handed alpha
Helix 18
18
A
425 441Right-handed alpha
Helix 19
19
A
446 454Right-handed alpha
Helix 20
20
A
455 459Right-handed 310
Helix 21
21
A
469 473Right-handed 310
Helix 22
22
A
476 489Right-handed alpha
Helix 23
23
A
499 504Right-handed alpha
Helix 24
24
A
509 513Right-handed 310
Helix 25
25
A
517 524Right-handed alpha
Helix 26
26
A
525 527Right-handed 310
Helix 27
27
A
534 539Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VK9.

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
128 133parallel
Strand 3
A
99 103parallel
Strand 4
A
280 283parallel
Strand 5
A
382 391anti-parallel
Strand 6
A
371 376anti-parallel
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