Analysis of interatomic Contacts of Structural Units in PDB entry:
2VKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VKC entry

There is 1 chain in PDB entry 2VKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1666LYS 1770
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2VKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1668 1686Right-handed alpha
Helix 2
2
A
1697 1718Right-handed alpha
Helix 3
3
A
1741 1752Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VKC.

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1690 1692first strand
Strand 2
A
1724 1728parallel
Strand 3
A
1764 1768anti-parallel
Strand 4
A
1756 1759anti-parallel
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