Analysis of interatomic Contacts of Structural Units in PDB entry:
2VKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VKH entry

There are 3 chains in PDB entry 2VKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 542
B
 LEU 3GLU 540
C
 MET 1GLY 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 2VKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
21 36Right-handed alpha
Helix 3
3
A
41 63Right-handed alpha
Helix 4
4
A
68 89Right-handed alpha
Helix 5
5
A
108 122Right-handed alpha
Helix 6
6
A
137 158Right-handed alpha
Helix 7
7
A
159 161Right-handed 310
Helix 8
8
A
167 197Right-handed alpha
Helix 9
9
A
201 214Right-handed alpha
Helix 10
10
A
217 234Right-handed alpha
Helix 11
11
A
248 261Right-handed alpha
Helix 12
12
A
264 281Right-handed alpha
Helix 13
13
A
308 325Right-handed alpha
Helix 14
14
A
334 338Right-handed 310
Helix 15
15
A
339 352Right-handed alpha
Helix 16
16
A
355 358Right-handed 310
Helix 17
17
A
393 420Right-handed alpha
Helix 18
18
A
423 438Right-handed alpha
Helix 19
19
A
443 451Right-handed alpha
Helix 20
20
A
452 455Right-handed 310
Helix 21
21
A
463 469Right-handed alpha
Helix 22
22
A
470 483Right-handed alpha
Helix 23
23
A
494 499Right-handed alpha
Helix 24
24
A
504 508Right-handed 310
Helix 25
25
A
512 519Right-handed alpha
Helix 26
26
A
528 537Right-handed alpha
Helix 27
27
B
5 13Right-handed alpha
Helix 28
28
B
21 36Right-handed alpha
Helix 29
29
B
41 63Right-handed alpha
Helix 30
30
B
68 90Right-handed alpha
Helix 31
31
B
108 122Right-handed alpha
Helix 32
32
B
137 157Right-handed alpha
Helix 33
33
B
167 197Right-handed alpha
Helix 34
34
B
201 214Right-handed alpha
Helix 35
35
B
217 234Right-handed alpha
Helix 36
36
B
241 243Right-handed 310
Helix 37
37
B
248 261Right-handed alpha
Helix 38
38
B
264 281Right-handed alpha
Helix 39
39
B
308 324Right-handed alpha
Helix 40
40
B
334 338Right-handed 310
Helix 41
41
B
339 352Right-handed alpha
Helix 42
42
B
355 359Right-handed 310
Helix 43
43
B
393 420Right-handed alpha
Helix 44
44
B
423 438Right-handed alpha
Helix 45
45
B
443 451Right-handed alpha
Helix 46
46
B
452 455Right-handed 310
Helix 47
47
B
470 484Right-handed alpha
Helix 48
48
B
494 499Right-handed alpha
Helix 49
49
B
504 508Right-handed 310
Helix 50
50
B
512 518Right-handed alpha
Helix 51
51
B
528 537Right-handed alpha
Helix 52
52
C
5 13Right-handed alpha
Helix 53
53
C
21 36Right-handed alpha
Helix 54
54
C
41 63Right-handed alpha
Helix 55
55
C
68 89Right-handed alpha
Helix 56
56
C
108 122Right-handed alpha
Helix 57
57
C
137 155Right-handed alpha
Helix 58
58
C
167 197Right-handed alpha
Helix 59
59
C
201 215Right-handed alpha
Helix 60
60
C
217 235Right-handed alpha
Helix 61
61
C
248 261Right-handed alpha
Helix 62
62
C
264 281Right-handed alpha
Helix 63
63
C
308 325Right-handed alpha
Helix 64
64
C
334 338Right-handed 310
Helix 65
65
C
339 350Right-handed alpha
Helix 66
66
C
355 359Right-handed 310
Helix 67
67
C
393 420Right-handed alpha
Helix 68
68
C
423 437Right-handed alpha
Helix 69
69
C
443 451Right-handed alpha
Helix 70
70
C
452 456Right-handed 310
Helix 71
71
C
463 469Right-handed alpha
Helix 72
72
C
470 484Right-handed alpha
Helix 73
73
C
494 499Right-handed alpha
Helix 74
74
C
504 508Right-handed 310
Helix 75
75
C
512 520Right-handed alpha
Helix 76
76
C
528 537Right-handed alpha
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There are 7 sheets in PDB entry 2VKH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
367 368anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
126 131parallel
Strand 3
A
97 101parallel
Strand 4
A
282 285parallel
Strand 5
A
381 389anti-parallel
Strand 6
A
374 378anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
360 361anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
367 368anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
126 131parallel
Strand 3
B
97 101parallel
Strand 4
B
282 285parallel
Strand 5
B
381 389anti-parallel
Strand 6
B
374 378anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
367 368anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 239first strand
Strand 2
C
126 131parallel
Strand 3
C
97 101parallel
Strand 4
C
282 285parallel
Strand 5
C
381 389anti-parallel
Strand 6
C
374 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il