Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VL0 entry

There are 10 chains in PDB entry 2VL0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	ILE 316
B	PRO 11	ILE 316
C	PRO 11	ILE 316
D	PRO 11	ILE 316
E	PRO 11	ILE 316
F	PRO 11	ILE 316
G	PRO 11	ILE 316
H	PRO 11	ILE 316
I	PRO 11	ILE 316
J	PRO 11	ILE 316

There are 59 helices in PDB entry 2VL0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	69	Right-handed alpha
Helix 2	2	A	200	207	Right-handed alpha
Helix 3	3	A	207	220	Right-handed alpha
Helix 4	4	A	226	252	Right-handed alpha
Helix 5	5	A	259	283	Right-handed alpha
Helix 6	6	B	59	69	Right-handed alpha
Helix 7	7	B	200	207	Right-handed alpha
Helix 8	8	B	207	220	Right-handed alpha
Helix 9	9	B	226	233	Right-handed alpha
Helix 10	10	B	233	252	Right-handed alpha
Helix 11	11	B	259	283	Right-handed alpha
Helix 12	12	C	60	68	Right-handed alpha
Helix 13	13	C	150	155	Right-handed alpha
Helix 14	14	C	156	158	Right-handed 310
Helix 15	15	C	200	207	Right-handed alpha
Helix 16	16	C	207	220	Right-handed alpha
Helix 17	17	C	226	233	Right-handed alpha
Helix 18	18	C	233	252	Right-handed alpha
Helix 19	19	C	259	283	Right-handed alpha
Helix 20	20	D	59	69	Right-handed alpha
Helix 21	21	D	200	207	Right-handed alpha
Helix 22	22	D	207	220	Right-handed alpha
Helix 23	23	D	226	252	Right-handed alpha
Helix 24	24	D	259	283	Right-handed alpha
Helix 25	25	E	60	69	Right-handed alpha
Helix 26	26	E	200	207	Right-handed alpha
Helix 27	27	E	207	220	Right-handed alpha
Helix 28	28	E	226	233	Right-handed alpha
Helix 29	29	E	233	252	Right-handed alpha
Helix 30	30	E	259	283	Right-handed alpha
Helix 31	31	F	60	69	Right-handed alpha
Helix 32	32	F	200	207	Right-handed alpha
Helix 33	33	F	207	220	Right-handed alpha
Helix 34	34	F	226	233	Right-handed alpha
Helix 35	35	F	233	252	Right-handed alpha
Helix 36	36	F	259	283	Right-handed alpha
Helix 37	37	G	59	69	Right-handed alpha
Helix 38	38	G	200	207	Right-handed alpha
Helix 39	39	G	207	220	Right-handed alpha
Helix 40	40	G	226	252	Right-handed alpha
Helix 41	41	G	259	283	Right-handed alpha
Helix 42	42	H	60	69	Right-handed alpha
Helix 43	43	H	200	207	Right-handed alpha
Helix 44	44	H	207	220	Right-handed alpha
Helix 45	45	H	226	233	Right-handed alpha
Helix 46	46	H	233	252	Right-handed alpha
Helix 47	47	H	259	283	Right-handed alpha
Helix 48	48	I	59	69	Right-handed alpha
Helix 49	49	I	200	207	Right-handed alpha
Helix 50	50	I	207	220	Right-handed alpha
Helix 51	51	I	226	233	Right-handed alpha
Helix 52	52	I	233	252	Right-handed alpha
Helix 53	53	I	259	283	Right-handed alpha
Helix 54	54	J	59	69	Right-handed alpha
Helix 55	55	J	200	207	Right-handed alpha
Helix 56	56	J	207	220	Right-handed alpha
Helix 57	57	J	226	233	Right-handed alpha
Helix 58	58	J	233	252	Right-handed alpha
Helix 59	59	J	259	283	Right-handed alpha

There are 22 sheets in PDB entry 2VL0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB, IA, JA, JB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	92	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	32	43	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	138	146	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	92	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	81	87	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	186	198	anti-parallel
Strand 4	A	160	161	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	186	198	anti-parallel
Strand 4	A	169	173	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	92	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	32	43	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	138	146	parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	92	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	81	87	anti-parallel

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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	186	198	anti-parallel
Strand 4	B	160	161	anti-parallel
Strand 5	B	186	198	anti-parallel
Strand 6	I	76	78	first strand
Strand 7	I	123	132	anti-parallel
Strand 8	I	186	198	anti-parallel
Strand 9	I	160	161	anti-parallel
Strand 10	I	186	198	anti-parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	92	94	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	81	87	anti-parallel
Strand 5	C	100	111	anti-parallel
Strand 6	C	138	146	first strand
Strand 7	C	12	27	parallel
Strand 8	C	32	43	anti-parallel
Strand 9	C	100	111	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	186	198	anti-parallel
Strand 4	C	160	161	anti-parallel
Strand 5	C	186	198	anti-parallel
Strand 6	C	169	173	anti-parallel
Strand 7	C	186	198	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	92	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	81	87	anti-parallel
Strand 5	D	100	111	anti-parallel
Strand 6	D	138	146	first strand
Strand 7	D	12	27	parallel
Strand 8	D	32	43	anti-parallel
Strand 9	D	100	111	anti-parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	186	198	anti-parallel
Strand 4	D	160	161	anti-parallel
Strand 5	D	186	198	anti-parallel
Strand 6	D	169	173	anti-parallel
Strand 7	D	186	198	anti-parallel

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	92	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	86	87	anti-parallel
Strand 5	E	100	111	anti-parallel
Strand 6	E	138	145	first strand
Strand 7	E	12	27	parallel
Strand 8	E	32	43	anti-parallel
Strand 9	E	100	111	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	186	198	anti-parallel
Strand 4	E	160	161	anti-parallel
Strand 5	E	186	198	anti-parallel
Strand 6	E	169	173	anti-parallel
Strand 7	E	186	198	anti-parallel

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	92	94	anti-parallel
Strand 3	F	100	111	anti-parallel
Strand 4	F	81	87	anti-parallel
Strand 5	F	100	111	anti-parallel
Strand 6	F	138	146	first strand
Strand 7	F	12	27	parallel
Strand 8	F	32	43	anti-parallel
Strand 9	F	100	111	anti-parallel

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There are 7 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	123	132	anti-parallel
Strand 3	F	186	198	anti-parallel
Strand 4	F	160	161	anti-parallel
Strand 5	F	186	198	anti-parallel
Strand 6	F	169	173	anti-parallel
Strand 7	F	186	198	anti-parallel

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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	92	94	anti-parallel
Strand 3	G	100	111	anti-parallel
Strand 4	G	86	87	anti-parallel
Strand 5	G	100	111	anti-parallel
Strand 6	G	138	146	first strand
Strand 7	G	12	27	parallel
Strand 8	G	32	43	anti-parallel
Strand 9	G	100	111	anti-parallel

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There are 7 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	123	132	anti-parallel
Strand 3	G	186	198	anti-parallel
Strand 4	G	160	161	anti-parallel
Strand 5	G	186	198	anti-parallel
Strand 6	G	169	173	anti-parallel
Strand 7	G	186	198	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	81	94	anti-parallel
Strand 3	H	100	111	anti-parallel
Strand 4	H	32	43	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	138	146	parallel

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There are 7 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	78	first strand
Strand 2	H	123	132	anti-parallel
Strand 3	H	186	198	anti-parallel
Strand 4	H	160	161	anti-parallel
Strand 5	H	186	198	anti-parallel
Strand 6	H	169	173	anti-parallel
Strand 7	H	186	198	anti-parallel

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There are 9 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	58	first strand
Strand 2	I	92	94	anti-parallel
Strand 3	I	100	111	anti-parallel
Strand 4	I	81	87	anti-parallel
Strand 5	I	100	111	anti-parallel
Strand 6	I	138	145	first strand
Strand 7	I	12	27	parallel
Strand 8	I	32	43	anti-parallel
Strand 9	I	100	111	anti-parallel

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There are 9 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	58	first strand
Strand 2	J	92	94	anti-parallel
Strand 3	J	100	111	anti-parallel
Strand 4	J	86	87	anti-parallel
Strand 5	J	100	111	anti-parallel
Strand 6	J	138	145	first strand
Strand 7	J	12	27	parallel
Strand 8	J	32	43	anti-parallel
Strand 9	J	100	111	anti-parallel

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There are 7 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	78	first strand
Strand 2	J	123	132	anti-parallel
Strand 3	J	186	198	anti-parallel
Strand 4	J	160	161	anti-parallel
Strand 5	J	186	198	anti-parallel
Strand 6	J	169	173	anti-parallel
Strand 7	J	186	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VL0

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL0