Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VL5 entry

There are 4 chains in PDB entry 2VL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1PRO 218
B
 ASP 1GLU 217
C
 GLN 1PRO 218
D
 ASP 1ASN 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2VL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
62 65Right-handed 310
Helix 3
3
A
87 91Right-handed 310
Helix 4
4
A
162 164Right-handed 310
Helix 5
5
A
192 194Right-handed 310
Helix 6
6
A
206 209Right-handed 310
Helix 7
7
B
83 87Right-handed 310
Helix 8
8
B
127 131Right-handed 310
Helix 9
9
B
187 192Right-handed alpha
Helix 10
10
C
28 32Right-handed 310
Helix 11
11
C
62 65Right-handed 310
Helix 12
12
C
74 76Right-handed 310
Helix 13
13
C
87 91Right-handed 310
Helix 14
14
C
162 164Right-handed 310
Helix 15
15
C
192 194Right-handed 310
Helix 16
16
C
206 209Right-handed 310
Helix 17
17
D
83 87Right-handed 310
Helix 18
18
D
125 132Right-handed alpha
Helix 19
19
D
187 191Right-handed alpha
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There are 21 sheets in PDB entry 2VL5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
113 117parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
113 117parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
108 109anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
141 151anti-parallel
Strand 3
A
180 190anti-parallel
Strand 4
A
169 171anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
141 151anti-parallel
Strand 3
A
180 190anti-parallel
Strand 4
A
175 177anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
200 205anti-parallel
Strand 3
A
210 215anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
66 71anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
106 111parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
37 42anti-parallel
Strand 5
B
49 53anti-parallel
Strand 6
B
57 58anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
34 35anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
133 143anti-parallel
Strand 3
B
177 186anti-parallel
Strand 4
B
163 167anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
148 154anti-parallel
Strand 3
B
195 202anti-parallel
Strand 4
B
209 214anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
113 117parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
44 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
113 117parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
108 109anti-parallel
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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 130first strand
Strand 2
C
141 151anti-parallel
Strand 3
C
180 190anti-parallel
Strand 4
C
169 171anti-parallel
Strand 5
C
180 190anti-parallel
Strand 6
C
175 177anti-parallel
Strand 7
C
180 190anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
200 205anti-parallel
Strand 3
C
210 215anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
74 79anti-parallel
Strand 4
D
66 71anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
37 42anti-parallel
Strand 5
D
49 53anti-parallel
Strand 6
D
57 58anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 31first strand
Strand 2
D
34 35anti-parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 122first strand
Strand 2
D
133 143anti-parallel
Strand 3
D
177 186anti-parallel
Strand 4
D
163 167anti-parallel
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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 159first strand
Strand 2
D
149 154anti-parallel
Strand 3
D
195 201anti-parallel
Strand 4
D
209 214anti-parallel
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