Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VL6 entry

There are 3 chains in PDB entry 2VL6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7SER 265
B
 GLN 7SER 265
C
 GLN 7SER 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2VL6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
30 40Right-handed alpha
Helix 3
3
A
49 56Right-handed alpha
Helix 4
4
A
56 67Right-handed alpha
Helix 5
5
A
70 84Right-handed alpha
Helix 6
6
A
86 90Right-handed 310
Helix 7
7
A
108 112Right-handed 310
Helix 8
8
A
113 117Right-handed 310
Helix 9
9
A
184 187Right-handed 310
Helix 10
10
A
200 204Right-handed 310
Helix 11
11
A
220 222Right-handed 310
Helix 12
12
B
9 21Right-handed alpha
Helix 13
13
B
30 41Right-handed alpha
Helix 14
14
B
49 56Right-handed alpha
Helix 15
15
B
56 67Right-handed alpha
Helix 16
16
B
70 84Right-handed alpha
Helix 17
17
B
86 90Right-handed 310
Helix 18
18
B
108 112Right-handed 310
Helix 19
19
B
113 117Right-handed 310
Helix 20
20
B
184 187Right-handed 310
Helix 21
21
B
200 204Right-handed 310
Helix 22
22
B
220 222Right-handed 310
Helix 23
23
C
9 21Right-handed alpha
Helix 24
24
C
30 41Right-handed alpha
Helix 25
25
C
49 56Right-handed alpha
Helix 26
26
C
56 66Right-handed alpha
Helix 27
27
C
70 84Right-handed alpha
Helix 28
28
C
86 90Right-handed 310
Helix 29
29
C
108 112Right-handed 310
Helix 30
30
C
113 117Right-handed 310
Helix 31
31
C
184 187Right-handed 310
Helix 32
32
C
200 204Right-handed 310
Helix 33
33
C
220 222Right-handed 310
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There are 9 sheets in PDB entry 2VL6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
98 101parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
120 130parallel
Strand 3
A
230 240anti-parallel
Strand 4
A
252 264anti-parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
188 198anti-parallel
Strand 7
A
134 139anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
141 145anti-parallel
Strand 3
A
179 182anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
98 101parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
120 130parallel
Strand 3
B
230 240anti-parallel
Strand 4
B
252 264anti-parallel
Strand 5
B
212 218anti-parallel
Strand 6
B
188 198anti-parallel
Strand 7
B
134 139anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
179 182anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
98 101parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
120 130parallel
Strand 3
C
230 240anti-parallel
Strand 4
C
252 264anti-parallel
Strand 5
C
212 218anti-parallel
Strand 6
C
188 198anti-parallel
Strand 7
C
134 139anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 154first strand
Strand 2
C
141 145anti-parallel
Strand 3
C
179 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il