Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VL8 entry

There are 3 chains in PDB entry 2VL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 542
B
 LEU 3GLU 540
C
 MET 1GLY 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 2VL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
21 36Right-handed alpha
Helix 3
3
A
41 63Right-handed alpha
Helix 4
4
A
68 89Right-handed alpha
Helix 5
5
A
108 122Right-handed alpha
Helix 6
6
A
137 156Right-handed alpha
Helix 7
7
A
167 197Right-handed alpha
Helix 8
8
A
201 214Right-handed alpha
Helix 9
9
A
217 234Right-handed alpha
Helix 10
10
A
248 261Right-handed alpha
Helix 11
11
A
264 281Right-handed alpha
Helix 12
12
A
308 325Right-handed alpha
Helix 13
13
A
334 338Right-handed 310
Helix 14
14
A
339 350Right-handed alpha
Helix 15
15
A
355 359Right-handed 310
Helix 16
16
A
393 420Right-handed alpha
Helix 17
17
A
423 439Right-handed alpha
Helix 18
18
A
443 451Right-handed alpha
Helix 19
19
A
452 456Right-handed 310
Helix 20
20
A
470 484Right-handed alpha
Helix 21
21
A
494 499Right-handed alpha
Helix 22
22
A
504 508Right-handed 310
Helix 23
23
A
512 519Right-handed alpha
Helix 24
24
A
527 537Right-handed alpha
Helix 25
25
B
5 13Right-handed alpha
Helix 26
26
B
21 36Right-handed alpha
Helix 27
27
B
41 63Right-handed alpha
Helix 28
28
B
68 89Right-handed alpha
Helix 29
29
B
108 122Right-handed alpha
Helix 30
30
B
137 155Right-handed alpha
Helix 31
31
B
167 197Right-handed alpha
Helix 32
32
B
201 214Right-handed alpha
Helix 33
33
B
217 234Right-handed alpha
Helix 34
34
B
241 243Right-handed 310
Helix 35
35
B
248 261Right-handed alpha
Helix 36
36
B
264 281Right-handed alpha
Helix 37
37
B
308 324Right-handed alpha
Helix 38
38
B
332 337Right-handed alpha
Helix 39
39
B
339 352Right-handed alpha
Helix 40
40
B
355 359Right-handed 310
Helix 41
41
B
393 420Right-handed alpha
Helix 42
42
B
423 438Right-handed alpha
Helix 43
43
B
443 451Right-handed alpha
Helix 44
44
B
452 455Right-handed 310
Helix 45
45
B
470 484Right-handed alpha
Helix 46
46
B
494 499Right-handed alpha
Helix 47
47
B
504 508Right-handed 310
Helix 48
48
B
512 518Right-handed alpha
Helix 49
49
B
528 537Right-handed alpha
Helix 50
50
C
5 13Right-handed alpha
Helix 51
51
C
21 36Right-handed alpha
Helix 52
52
C
41 63Right-handed alpha
Helix 53
53
C
68 89Right-handed alpha
Helix 54
54
C
108 122Right-handed alpha
Helix 55
55
C
137 155Right-handed alpha
Helix 56
56
C
167 197Right-handed alpha
Helix 57
57
C
201 214Right-handed alpha
Helix 58
58
C
217 235Right-handed alpha
Helix 59
59
C
248 261Right-handed alpha
Helix 60
60
C
264 281Right-handed alpha
Helix 61
61
C
308 325Right-handed alpha
Helix 62
62
C
334 338Right-handed 310
Helix 63
63
C
339 352Right-handed alpha
Helix 64
64
C
355 359Right-handed 310
Helix 65
65
C
393 420Right-handed alpha
Helix 66
66
C
423 437Right-handed alpha
Helix 67
67
C
443 451Right-handed alpha
Helix 68
68
C
452 456Right-handed 310
Helix 69
69
C
463 469Right-handed alpha
Helix 70
70
C
470 484Right-handed alpha
Helix 71
71
C
494 499Right-handed alpha
Helix 72
72
C
504 508Right-handed 310
Helix 73
73
C
512 519Right-handed alpha
Helix 74
74
C
528 536Right-handed alpha
Helix 75
75
C
537 539Right-handed 310
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There are 6 sheets in PDB entry 2VL8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
367 368anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
126 131parallel
Strand 3
A
97 101parallel
Strand 4
A
282 285parallel
Strand 5
A
381 389anti-parallel
Strand 6
A
374 378anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
367 368anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
126 131parallel
Strand 3
B
97 101parallel
Strand 4
B
282 285parallel
Strand 5
B
381 389anti-parallel
Strand 6
B
374 378anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
367 368anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 239first strand
Strand 2
C
126 131parallel
Strand 3
C
97 101parallel
Strand 4
C
282 285parallel
Strand 5
C
381 389anti-parallel
Strand 6
C
374 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il