Analysis of interatomic Contacts of Structural Units in PDB entry:
2VL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VL9 entry

There are 4 chains in PDB entry 2VL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 161
B
 ALA 1LEU 161
C
 ALA 1LEU 161
D
 ALA 1LEU 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 2VL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
25 30Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
82 88Right-handed alpha
Helix 5
5
A
102 107Right-handed alpha
Helix 6
6
A
116 121Right-handed alpha
Helix 7
7
A
156 160Right-handed 310
Helix 8
8
B
47 51Right-handed 310
Helix 9
9
B
52 56Right-handed 310
Helix 10
10
B
58 63Right-handed alpha
Helix 11
11
B
77 88Right-handed alpha
Helix 12
12
B
102 107Right-handed alpha
Helix 13
13
B
116 121Right-handed alpha
Helix 14
14
B
156 160Right-handed 310
Helix 15
15
C
25 30Right-handed alpha
Helix 16
16
C
52 57Right-handed alpha
Helix 17
17
C
58 63Right-handed alpha
Helix 18
18
C
77 88Right-handed alpha
Helix 19
19
C
102 109Right-handed alpha
Helix 20
20
C
115 120Right-handed 310
Helix 21
21
C
156 160Right-handed 310
Helix 22
22
D
25 30Right-handed alpha
Helix 23
23
D
52 57Right-handed alpha
Helix 24
24
D
57 63Right-handed alpha
Helix 25
25
D
64 66Right-handed 310
Helix 26
26
D
77 82Right-handed alpha
Helix 27
27
D
82 87Right-handed alpha
Helix 28
28
D
102 107Right-handed alpha
Helix 29
29
D
116 121Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 2VL9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, CC, A, DB, C,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
95 96parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
34 38parallel
Strand 3
B
128 133anti-parallel
Strand 4
B
136 140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 38first strand
Strand 2
C
69 73parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
141 142anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
13 16anti-parallel
Strand 3
D
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 38first strand
Strand 2
D
69 73parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 133first strand
Strand 2
D
136 137anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il