Analysis of interatomic Contacts of Structural Units in PDB entry:
2VLB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VLB entry

There are 4 chains in PDB entry 2VLB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6SER 240
B
 THR 6ASP 238
C
 THR 6GLY 241
D
 THR 6SER 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2VLB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 27Right-handed alpha
Helix 2
2
A
48 65Right-handed alpha
Helix 3
3
A
75 80Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
128 141Right-handed alpha
Helix 7
7
A
154 157Right-handed 310
Helix 8
8
A
164 177Right-handed alpha
Helix 9
9
A
196 204Right-handed alpha
Helix 10
10
A
211 223Right-handed alpha
Helix 11
11
A
235 239Right-handed alpha
Helix 12
12
B
22 27Right-handed alpha
Helix 13
13
B
48 65Right-handed alpha
Helix 14
14
B
75 80Right-handed alpha
Helix 15
15
B
83 97Right-handed alpha
Helix 16
16
B
104 115Right-handed alpha
Helix 17
17
B
128 141Right-handed alpha
Helix 18
18
B
164 177Right-handed alpha
Helix 19
19
B
196 204Right-handed alpha
Helix 20
20
B
211 223Right-handed alpha
Helix 21
21
C
19 27Right-handed alpha
Helix 22
22
C
48 65Right-handed alpha
Helix 23
23
C
76 80Right-handed 310
Helix 24
24
C
83 97Right-handed alpha
Helix 25
25
C
104 115Right-handed alpha
Helix 26
26
C
128 141Right-handed alpha
Helix 27
27
C
157 160Right-handed alpha
Helix 28
28
C
164 177Right-handed alpha
Helix 29
29
C
196 204Right-handed alpha
Helix 30
30
C
211 223Right-handed alpha
Helix 31
31
C
235 240Right-handed alpha
Helix 32
32
D
23 27Right-handed alpha
Helix 33
33
D
48 65Right-handed alpha
Helix 34
34
D
75 80Right-handed alpha
Helix 35
35
D
83 97Right-handed alpha
Helix 36
36
D
104 115Right-handed alpha
Helix 37
37
D
128 141Right-handed alpha
Helix 38
38
D
156 161Right-handed alpha
Helix 39
39
D
164 177Right-handed alpha
Helix 40
40
D
193 204Right-handed alpha
Helix 41
41
D
211 223Right-handed alpha
Helix 42
42
D
235 240Right-handed alpha
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There are 8 sheets in PDB entry 2VLB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
9 14parallel
Strand 3
A
69 73parallel
Strand 4
A
100 102parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
119 124parallel
Strand 3
A
183 187parallel
Strand 4
A
207 209parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
9 13parallel
Strand 3
B
69 73parallel
Strand 4
B
100 102parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
119 124parallel
Strand 3
B
183 187parallel
Strand 4
B
207 209parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 36first strand
Strand 2
C
9 13parallel
Strand 3
C
69 73parallel
Strand 4
C
100 102parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 149first strand
Strand 2
C
119 124parallel
Strand 3
C
183 187parallel
Strand 4
C
207 209parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 36first strand
Strand 2
D
9 13parallel
Strand 3
D
69 73parallel
Strand 4
D
100 102parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 149first strand
Strand 2
D
119 124parallel
Strand 3
D
183 187parallel
Strand 4
D
207 209parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il