Analysis of interatomic Contacts of Structural Units in PDB entry:
2VLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VLC entry

There are 2 chains in PDB entry 2VLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 1LEU 548
B
TYR 1LEU 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2VLC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
32 36Right-handed 310
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
46 49Right-handed 310
Helix 5
AA5
A
96 100Right-handed 310
Helix 6
AA6
A
114 123Right-handed alpha
Helix 7
AA7
A
125 129Right-handed 310
Helix 8
AA8
A
132 146Right-handed alpha
Helix 9
AA9
A
151 165Right-handed alpha
Helix 10
AB1
A
165 171Right-handed alpha
Helix 11
AB2
A
171 185Right-handed alpha
Helix 12
AB3
A
191 200Right-handed alpha
Helix 13
AB4
A
200 210Right-handed alpha
Helix 14
AB5
A
238 244Right-handed 310
Helix 15
AB6
A
302 304Right-handed 310
Helix 16
AB7
A
310 312Right-handed 310
Helix 17
AB8
A
329 333Right-handed 310
Helix 18
AB9
A
370 374Right-handed 310
Helix 19
AC1
A
411 414Right-handed 310
Helix 20
AC2
A
431 433Right-handed 310
Helix 21
AC3
A
497 501Right-handed 310
Helix 22
AC4
A
523 529Right-handed 310
Helix 23
AC5
A
539 543Right-handed 310
Helix 24
AC6
B
12 28Right-handed alpha
Helix 25
AC7
B
32 36Right-handed 310
Helix 26
AC8
B
41 45Right-handed 310
Helix 27
AC9
B
46 49Right-handed 310
Helix 28
AD1
B
114 123Right-handed alpha
Helix 29
AD2
B
125 129Right-handed 310
Helix 30
AD3
B
132 146Right-handed alpha
Helix 31
AD4
B
151 165Right-handed alpha
Helix 32
AD5
B
165 171Right-handed alpha
Helix 33
AD6
B
171 185Right-handed alpha
Helix 34
AD7
B
191 210Right-handed alpha
Helix 35
AD8
B
238 244Right-handed 310
Helix 36
AD9
B
302 304Right-handed 310
Helix 37
AE1
B
310 312Right-handed 310
Helix 38
AE2
B
329 333Right-handed 310
Helix 39
AE3
B
370 374Right-handed 310
Helix 40
AE4
B
385 389Right-handed 310
Helix 41
AE5
B
411 414Right-handed 310
Helix 42
AE6
B
431 435Right-handed 310
Helix 43
AE7
B
497 501Right-handed 310
Helix 44
AE8
B
523 529Right-handed 310
Helix 45
AE9
B
539 543Right-handed 310
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There are 25 sheets in PDB entry 2VLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 7first strand
Strand 2
A
51 57parallel
Strand 3
A
65 70anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
84 87anti-parallel
Strand 6
A
107 108parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 224first strand
Strand 2
A
230 235anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 296first strand
Strand 2
A
334 336anti-parallel
Strand 3
A
342 344anti-parallel
Strand 4
A
347 351anti-parallel
Strand 5
A
360 363anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
298 300first strand
Strand 2
A
416 418anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
305 308first strand
Strand 2
A
319 322anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
376 377first strand
Strand 2
A
383 384anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
391 393first strand
Strand 2
A
404 406anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
425 427first strand
Strand 2
A
458 460anti-parallel
Strand 3
A
466 468anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
429 430first strand
Strand 2
A
545 546anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
435 440first strand
Strand 2
A
443 448anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
474 478first strand
Strand 2
A
488 492anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
503 504first strand
Strand 2
A
510 511anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 521first strand
Strand 2
A
531 534anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 7first strand
Strand 2
B
51 57parallel
Strand 3
B
65 70anti-parallel
Strand 4
B
76 81anti-parallel
Strand 5
B
84 87anti-parallel
Strand 6
B
107 108parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
216 224first strand
Strand 2
B
230 235anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
295 296first strand
Strand 2
B
334 336anti-parallel
Strand 3
B
342 344anti-parallel
Strand 4
B
347 351anti-parallel
Strand 5
B
360 363anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
298 300first strand
Strand 2
B
416 418anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
305 308first strand
Strand 2
B
319 322anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
376 377first strand
Strand 2
B
383 384anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
391 393first strand
Strand 2
B
404 406anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
425 427first strand
Strand 2
B
458 460anti-parallel
Strand 3
B
466 468anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
429 430first strand
Strand 2
B
545 546anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
436 440first strand
Strand 2
B
443 447anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
474 478first strand
Strand 2
B
488 492anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
503 504first strand
Strand 2
B
510 512anti-parallel
Strand 3
B
517 521anti-parallel
Strand 4
B
531 534anti-parallel
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