Analysis of interatomic Contacts of Structural Units in PDB entry:
2VLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VLM entry

There are 2 chains in PDB entry 2VLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLN 3SER 201
E
 GLY 5ASP 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2VLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
81 85Right-handed 310
Helix 2
2
D
183 188Right-handed alpha
Helix 3
3
E
116 120Right-handed 310
Helix 4
4
E
131 139Right-handed alpha
Helix 5
5
E
198 202Right-handed alpha
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There are 9 sheets in PDB entry 2VLM. Click on sheet of interest to get list of strands forming it: A, DB, C, DD, DE, EA, EB, EC, ED,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
72 77anti-parallel
Strand 4
D
62 66anti-parallel
Strand 5
D
56 59anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
105 110parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
45 50anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
105 110parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
100 101anti-parallel
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There are 8 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
154 156first strand
Strand 2
D
172 176anti-parallel
Strand 3
D
132 137anti-parallel
Strand 4
D
119 125anti-parallel
Strand 5
E
124 129anti-parallel
Strand 6
E
140 150anti-parallel
Strand 7
E
188 197anti-parallel
Strand 8
E
170 172anti-parallel
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There are 8 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
154 156first strand
Strand 2
D
172 176anti-parallel
Strand 3
D
132 137anti-parallel
Strand 4
D
119 125anti-parallel
Strand 5
E
124 129anti-parallel
Strand 6
E
140 150anti-parallel
Strand 7
E
188 197anti-parallel
Strand 8
E
177 178anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 9first strand
Strand 2
E
21 27anti-parallel
Strand 3
E
78 80anti-parallel
Strand 4
E
66 68anti-parallel
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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
109 114parallel
Strand 3
E
89 96anti-parallel
Strand 4
E
33 40anti-parallel
Strand 5
E
44 51anti-parallel
Strand 6
E
58 59anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
109 114parallel
Strand 3
E
89 96anti-parallel
Strand 4
E
104 105anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 166first strand
Strand 2
E
155 161anti-parallel
Strand 3
E
207 214anti-parallel
Strand 4
E
233 240anti-parallel
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