Analysis of interatomic Contacts of Structural Units in PDB entry:
2VME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VME entry

There are 12 chains in PDB entry 2VME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 83
A	ASP 85	ASN 257
B	MET 1	ASP 83
B	ASP 85	ASN 257
C	MET 1	ASP 83
C	ASP 85	ASN 256
D	MET 1	ASP 83
D	ASP 85	ASN 257
E	MET 1	ASP 83
E	ASP 85	ASN 257
F	MET 1	ASP 83
F	ASP 85	ASN 256

There are 6 helices in PDB entry 2VME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	14	Right-handed alpha
Helix 2	1	B	10	14	Right-handed alpha
Helix 3	1	C	10	14	Right-handed alpha
Helix 4	1	D	10	14	Right-handed alpha
Helix 5	1	E	10	14	Right-handed alpha
Helix 6	1	F	10	14	Right-handed alpha

There are 24 sheets in PDB entry 2VME. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	63	66	anti-parallel
Strand 3	A	129	142	anti-parallel
Strand 4	A	87	96	first strand
Strand 5	A	102	104	anti-parallel
Strand 6	A	111	114	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	71	79	first strand
Strand 3	A	146	153	first strand

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	170	first strand
Strand 2	A	243	254	anti-parallel
Strand 3	A	200	210	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	190	first strand
Strand 2	A	230	237	anti-parallel
Strand 3	A	220	224	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	129	142	anti-parallel
Strand 4	B	87	96	first strand
Strand 5	B	102	104	anti-parallel
Strand 6	B	111	114	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	71	79	first strand
Strand 3	B	146	153	first strand

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	170	first strand
Strand 2	B	243	254	anti-parallel
Strand 3	B	200	210	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	190	first strand
Strand 2	B	230	237	anti-parallel
Strand 3	B	220	224	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	63	66	anti-parallel
Strand 3	C	129	142	anti-parallel
Strand 4	C	87	96	first strand
Strand 5	C	102	104	anti-parallel
Strand 6	C	111	114	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	125	first strand
Strand 2	C	71	79	first strand
Strand 3	C	146	153	first strand

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	170	first strand
Strand 2	C	243	254	anti-parallel
Strand 3	C	200	210	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	190	first strand
Strand 2	C	230	237	anti-parallel
Strand 3	C	220	224	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	63	66	anti-parallel
Strand 3	D	129	142	anti-parallel
Strand 4	D	87	96	first strand
Strand 5	D	102	104	anti-parallel
Strand 6	D	111	114	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	71	79	first strand
Strand 3	D	146	153	first strand

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	170	first strand
Strand 2	D	243	254	anti-parallel
Strand 3	D	200	210	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	190	first strand
Strand 2	D	230	237	anti-parallel
Strand 3	D	220	224	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	20	first strand
Strand 2	E	63	66	anti-parallel
Strand 3	E	129	142	anti-parallel
Strand 4	E	87	96	first strand
Strand 5	E	102	104	anti-parallel
Strand 6	E	111	114	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	125	first strand
Strand 2	E	71	79	first strand
Strand 3	E	146	153	first strand

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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	170	first strand
Strand 2	E	243	254	anti-parallel
Strand 3	E	200	210	anti-parallel

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There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	190	first strand
Strand 2	E	230	237	anti-parallel
Strand 3	E	220	224	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	20	first strand
Strand 2	F	63	66	anti-parallel
Strand 3	F	129	142	anti-parallel
Strand 4	F	87	96	first strand
Strand 5	F	102	104	anti-parallel
Strand 6	F	111	114	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	125	first strand
Strand 2	F	71	79	first strand
Strand 3	F	146	153	first strand

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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	170	first strand
Strand 2	F	243	254	anti-parallel
Strand 3	F	200	210	anti-parallel

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There are 3 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	190	first strand
Strand 2	F	230	237	anti-parallel
Strand 3	F	220	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VME

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VME