Analysis of interatomic Contacts of Structural Units in PDB entry:
2VMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VMH entry

There is 1 chain in PDB entry 2VMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 904THR 1050
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2VMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
911 913Right-handed 310
Helix 2
2
A
981 984Right-handed 310
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There are 5 sheets in PDB entry 2VMH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
908 909first strand
Strand 2
A
1041 1050anti-parallel
Strand 3
A
951 955anti-parallel
Strand 4
A
926 927anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
908 909first strand
Strand 2
A
1041 1050anti-parallel
Strand 3
A
972 979anti-parallel
Strand 4
A
1014 1019anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 919first strand
Strand 2
A
958 963anti-parallel
Strand 3
A
1025 1031anti-parallel
Strand 4
A
989 996anti-parallel
Strand 5
A
1007 1008anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 919first strand
Strand 2
A
958 963anti-parallel
Strand 3
A
1025 1031anti-parallel
Strand 4
A
989 996anti-parallel
Strand 5
A
999 1003anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
936 939first strand
Strand 2
A
945 948anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il