Analysis of interatomic Contacts of Structural Units in PDB entry:
2VMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VMK entry

There are 4 chains in PDB entry 2VMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 508
B	MET 1	PRO 513
C	MET 1	HIS 506
D	MET 1	GLU 515

There are 77 helices in PDB entry 2VMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	51	53	Right-handed 310
Helix 2	2	A	71	73	Right-handed 310
Helix 3	3	A	74	78	Right-handed 310
Helix 4	4	A	89	93	Right-handed 310
Helix 5	5	A	148	156	Right-handed alpha
Helix 6	6	A	170	173	Right-handed 310
Helix 7	7	A	176	199	Right-handed alpha
Helix 8	8	A	212	222	Right-handed alpha
Helix 9	9	A	233	248	Right-handed alpha
Helix 10	10	A	249	253	Right-handed 310
Helix 11	11	A	264	269	Right-handed alpha
Helix 12	12	A	271	277	Right-handed alpha
Helix 13	13	A	278	280	Right-handed 310
Helix 14	14	A	314	338	Right-handed alpha
Helix 15	15	A	352	367	Right-handed alpha
Helix 16	16	A	368	370	Right-handed 310
Helix 17	17	A	415	432	Right-handed alpha
Helix 18	18	A	445	454	Right-handed alpha
Helix 19	19	A	455	466	Right-handed alpha
Helix 20	20	A	498	500	Right-handed 310
Helix 21	21	A	501	506	Right-handed alpha
Helix 22	22	B	71	73	Right-handed 310
Helix 23	23	B	74	78	Right-handed 310
Helix 24	24	B	89	94	Right-handed alpha
Helix 25	25	B	144	157	Right-handed alpha
Helix 26	26	B	170	175	Right-handed 310
Helix 27	27	B	176	197	Right-handed alpha
Helix 28	28	B	212	222	Right-handed alpha
Helix 29	29	B	233	248	Right-handed alpha
Helix 30	30	B	249	253	Right-handed 310
Helix 31	31	B	264	269	Right-handed alpha
Helix 32	32	B	271	276	Right-handed alpha
Helix 33	33	B	277	280	Right-handed 310
Helix 34	34	B	314	338	Right-handed alpha
Helix 35	35	B	352	367	Right-handed alpha
Helix 36	36	B	415	432	Right-handed alpha
Helix 37	37	B	445	452	Right-handed alpha
Helix 38	38	B	455	466	Right-handed alpha
Helix 39	39	B	498	500	Right-handed 310
Helix 40	40	B	501	506	Right-handed alpha
Helix 41	41	B	507	509	Right-handed 310
Helix 42	42	C	71	73	Right-handed 310
Helix 43	43	C	74	78	Right-handed 310
Helix 44	44	C	89	94	Right-handed alpha
Helix 45	45	C	150	156	Right-handed alpha
Helix 46	46	C	170	175	Right-handed 310
Helix 47	47	C	176	199	Right-handed alpha
Helix 48	48	C	213	222	Right-handed alpha
Helix 49	49	C	233	247	Right-handed alpha
Helix 50	50	C	249	253	Right-handed 310
Helix 51	51	C	264	269	Right-handed alpha
Helix 52	52	C	271	278	Right-handed alpha
Helix 53	53	C	314	338	Right-handed alpha
Helix 54	54	C	352	367	Right-handed alpha
Helix 55	55	C	415	432	Right-handed alpha
Helix 56	56	C	445	452	Right-handed alpha
Helix 57	57	C	455	466	Right-handed alpha
Helix 58	58	C	498	500	Right-handed 310
Helix 59	59	C	501	506	Right-handed alpha
Helix 60	60	D	71	73	Right-handed 310
Helix 61	61	D	74	78	Right-handed 310
Helix 62	62	D	89	93	Right-handed 310
Helix 63	63	D	148	158	Right-handed alpha
Helix 64	64	D	176	199	Right-handed alpha
Helix 65	65	D	212	222	Right-handed alpha
Helix 66	66	D	233	247	Right-handed alpha
Helix 67	67	D	249	253	Right-handed 310
Helix 68	68	D	264	269	Right-handed alpha
Helix 69	69	D	271	278	Right-handed alpha
Helix 70	70	D	314	338	Right-handed alpha
Helix 71	71	D	352	367	Right-handed alpha
Helix 72	72	D	415	433	Right-handed alpha
Helix 73	73	D	444	452	Right-handed alpha
Helix 74	74	D	455	466	Right-handed alpha
Helix 75	75	D	498	500	Right-handed 310
Helix 76	76	D	501	506	Right-handed alpha
Helix 77	77	D	506	511	Right-handed alpha

There are 23 sheets in PDB entry 2VMK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	30	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	226	231	parallel
Strand 5	A	256	258	parallel

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There are 12 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	50	first strand
Strand 2	A	206	208	anti-parallel
Strand 3	A	55	59	first strand
Strand 4	A	41	50	anti-parallel
Strand 5	A	66	69	first strand
Strand 6	A	55	59	anti-parallel
Strand 7	A	99	106	first strand
Strand 8	A	41	50	anti-parallel
Strand 9	A	115	117	first strand
Strand 10	A	66	69	parallel
Strand 11	A	206	208	first strand
Strand 12	A	41	50	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	127	130	anti-parallel
Strand 3	A	165	168	anti-parallel
Strand 4	A	138	139	parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	A	341	346	parallel
Strand 5	A	384	389	anti-parallel
Strand 6	A	374	379	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	B	412	414	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	B	401	403	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	476	first strand
Strand 2	A	436	444	parallel
Strand 3	A	485	490	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	28	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	226	231	parallel
Strand 5	B	256	258	parallel

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There are 12 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	50	first strand
Strand 2	B	206	208	anti-parallel
Strand 3	B	55	59	first strand
Strand 4	B	41	50	anti-parallel
Strand 5	B	66	69	first strand
Strand 6	B	55	59	anti-parallel
Strand 7	B	99	106	first strand
Strand 8	B	41	50	anti-parallel
Strand 9	B	115	117	first strand
Strand 10	B	66	69	parallel
Strand 11	B	206	208	first strand
Strand 12	B	41	50	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	127	130	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	138	139	parallel

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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	341	346	parallel
Strand 5	B	384	389	anti-parallel
Strand 6	B	374	379	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	476	first strand
Strand 2	B	436	444	parallel
Strand 3	B	485	490	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	29	first strand
Strand 2	C	15	20	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	C	226	231	parallel
Strand 5	C	256	258	parallel

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There are 12 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	50	first strand
Strand 2	C	206	208	anti-parallel
Strand 3	C	55	59	first strand
Strand 4	C	41	50	anti-parallel
Strand 5	C	66	69	first strand
Strand 6	C	55	59	anti-parallel
Strand 7	C	99	106	first strand
Strand 8	C	41	50	anti-parallel
Strand 9	C	115	117	first strand
Strand 10	C	66	69	parallel
Strand 11	C	206	208	first strand
Strand 12	C	41	50	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	127	130	anti-parallel
Strand 3	C	165	168	anti-parallel

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There are 6 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	290	295	anti-parallel
Strand 3	C	300	305	anti-parallel
Strand 4	C	341	346	parallel
Strand 5	C	384	389	anti-parallel
Strand 6	C	374	379	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	D	401	403	anti-parallel

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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	476	first strand
Strand 2	C	436	444	parallel
Strand 3	C	485	490	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	28	first strand
Strand 2	D	15	20	anti-parallel
Strand 3	D	2	7	anti-parallel
Strand 4	D	226	231	parallel
Strand 5	D	256	258	parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	55	59	anti-parallel
Strand 3	D	41	50	anti-parallel
Strand 4	D	116	117	first strand
Strand 5	D	99	104	anti-parallel
Strand 6	D	41	50	anti-parallel
Strand 7	D	206	208	anti-parallel
Strand 8	D	41	50	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	127	130	anti-parallel
Strand 3	D	165	168	anti-parallel

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There are 6 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	290	295	anti-parallel
Strand 3	D	300	305	anti-parallel
Strand 4	D	341	346	parallel
Strand 5	D	385	389	anti-parallel
Strand 6	D	374	379	anti-parallel

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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	475	first strand
Strand 2	D	436	443	parallel
Strand 3	D	485	490	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VMK