Analysis of interatomic Contacts of Structural Units in PDB entry:
2VML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VML entry

There are 12 chains in PDB entry 2VML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 162
B
 MET 1ALA 172
C
 MET 1SER 162
D
 MET 1ALA 172
E
 MET 1SER 162
F
 MET 1ALA 172
G
 MET 1SER 162
H
 MET 1ALA 172
I
 MET 1SER 162
J
 MET 1ALA 172
K
 MET 1SER 162
L
 MET 1ALA 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are108 helices in PDB entry 2VML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
20 63Right-handed alpha
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
75 100Right-handed alpha
Helix 5
5
A
102 109Right-handed alpha
Helix 6
6
A
112 120Right-handed alpha
Helix 7
7
A
123 142Right-handed alpha
Helix 8
8
A
143 161Right-handed alpha
Helix 9
9
B
3 15Right-handed alpha
Helix 10
10
B
20 33Right-handed alpha
Helix 11
11
B
33 46Right-handed alpha
Helix 12
12
B
47 63Right-handed alpha
Helix 13
13
B
64 68Right-handed 310
Helix 14
14
B
75 100Right-handed alpha
Helix 15
15
B
102 109Right-handed alpha
Helix 16
16
B
112 121Right-handed alpha
Helix 17
17
B
123 144Right-handed alpha
Helix 18
18
B
153 172Right-handed alpha
Helix 19
19
C
3 15Right-handed alpha
Helix 20
20
C
20 63Right-handed alpha
Helix 21
21
C
64 68Right-handed 310
Helix 22
22
C
75 100Right-handed alpha
Helix 23
23
C
102 109Right-handed alpha
Helix 24
24
C
112 120Right-handed alpha
Helix 25
25
C
123 139Right-handed alpha
Helix 26
26
C
143 161Right-handed alpha
Helix 27
27
D
3 15Right-handed alpha
Helix 28
28
D
20 33Right-handed alpha
Helix 29
29
D
33 46Right-handed alpha
Helix 30
30
D
47 63Right-handed alpha
Helix 31
31
D
64 68Right-handed 310
Helix 32
32
D
75 100Right-handed alpha
Helix 33
33
D
102 109Right-handed alpha
Helix 34
34
D
112 121Right-handed alpha
Helix 35
35
D
123 144Right-handed alpha
Helix 36
36
D
153 172Right-handed alpha
Helix 37
37
E
3 15Right-handed alpha
Helix 38
38
E
20 63Right-handed alpha
Helix 39
39
E
64 68Right-handed 310
Helix 40
40
E
75 100Right-handed alpha
Helix 41
41
E
102 109Right-handed alpha
Helix 42
42
E
112 120Right-handed alpha
Helix 43
43
E
123 139Right-handed alpha
Helix 44
44
E
143 161Right-handed alpha
Helix 45
45
F
3 15Right-handed alpha
Helix 46
46
F
20 33Right-handed alpha
Helix 47
47
F
33 46Right-handed alpha
Helix 48
48
F
47 63Right-handed alpha
Helix 49
49
F
64 68Right-handed 310
Helix 50
50
F
75 100Right-handed alpha
Helix 51
51
F
102 109Right-handed alpha
Helix 52
52
F
112 121Right-handed alpha
Helix 53
53
F
123 144Right-handed alpha
Helix 54
54
F
153 172Right-handed alpha
Helix 55
55
G
3 15Right-handed alpha
Helix 56
56
G
20 63Right-handed alpha
Helix 57
57
G
64 68Right-handed 310
Helix 58
58
G
75 100Right-handed alpha
Helix 59
59
G
102 109Right-handed alpha
Helix 60
60
G
112 120Right-handed alpha
Helix 61
61
G
123 142Right-handed alpha
Helix 62
62
G
143 161Right-handed alpha
Helix 63
63
H
3 15Right-handed alpha
Helix 64
64
H
20 33Right-handed alpha
Helix 65
65
H
33 46Right-handed alpha
Helix 66
66
H
47 63Right-handed alpha
Helix 67
67
H
64 68Right-handed 310
Helix 68
68
H
75 100Right-handed alpha
Helix 69
69
H
102 109Right-handed alpha
Helix 70
70
H
112 121Right-handed alpha
Helix 71
71
H
123 144Right-handed alpha
Helix 72
72
H
153 172Right-handed alpha
Helix 73
73
I
3 15Right-handed alpha
Helix 74
74
I
20 63Right-handed alpha
Helix 75
75
I
64 68Right-handed 310
Helix 76
76
I
75 100Right-handed alpha
Helix 77
77
I
102 109Right-handed alpha
Helix 78
78
I
112 120Right-handed alpha
Helix 79
79
I
123 139Right-handed alpha
Helix 80
80
I
143 161Right-handed alpha
Helix 81
81
J
3 15Right-handed alpha
Helix 82
82
J
20 33Right-handed alpha
Helix 83
83
J
33 46Right-handed alpha
Helix 84
84
J
47 63Right-handed alpha
Helix 85
85
J
64 68Right-handed 310
Helix 86
86
J
75 100Right-handed alpha
Helix 87
87
J
102 109Right-handed alpha
Helix 88
88
J
112 121Right-handed alpha
Helix 89
89
J
123 144Right-handed alpha
Helix 90
90
J
153 172Right-handed alpha
Helix 91
91
K
3 15Right-handed alpha
Helix 92
92
K
20 63Right-handed alpha
Helix 93
93
K
64 68Right-handed 310
Helix 94
94
K
75 100Right-handed alpha
Helix 95
95
K
102 109Right-handed alpha
Helix 96
96
K
112 120Right-handed alpha
Helix 97
97
K
123 139Right-handed alpha
Helix 98
98
K
143 161Right-handed alpha
Helix 99
99
L
3 15Right-handed alpha
Helix 100
100
L
20 33Right-handed alpha
Helix 101
101
L
33 46Right-handed alpha
Helix 102
102
L
47 63Right-handed alpha
Helix 103
103
L
64 68Right-handed 310
Helix 104
104
L
75 100Right-handed alpha
Helix 105
105
L
102 109Right-handed alpha
Helix 106
106
L
112 121Right-handed alpha
Helix 107
107
L
123 144Right-handed alpha
Helix 108
108
L
153 172Right-handed alpha
Back to top of page
There are no sheets in PDB entry 2VML
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il