Analysis of interatomic Contacts of Structural Units in PDB entry:
2VN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VN5 entry

There are 4 chains in PDB entry 2VN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11PRO 152
B
 ILE 3VAL 61
C
 THR 2PRO 152
D
 ILE 3MET 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 41Right-handed 310
Helix 2
2
A
70 74Right-handed alpha
Helix 3
3
B
15 28Right-handed alpha
Helix 4
4
B
34 38Right-handed 310
Helix 5
5
B
46 60Right-handed alpha
Helix 6
6
C
37 41Right-handed 310
Helix 7
7
C
70 74Right-handed alpha
Helix 8
8
D
15 28Right-handed alpha
Helix 9
9
D
34 38Right-handed 310
Helix 10
10
D
46 58Right-handed alpha
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There are 6 sheets in PDB entry 2VN5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 64first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
27 35anti-parallel
Strand 4
A
13 17anti-parallel
Strand 5
A
141 144parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
146 150parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
43 51anti-parallel
Strand 5
A
129 132anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
146 150parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
43 51anti-parallel
Strand 5
A
83 89anti-parallel
Strand 6
A
75 80anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 64first strand
Strand 2
C
102 111anti-parallel
Strand 3
C
27 35anti-parallel
Strand 4
C
13 17anti-parallel
Strand 5
C
141 144parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 22first strand
Strand 2
C
146 150parallel
Strand 3
C
118 125anti-parallel
Strand 4
C
45 51anti-parallel
Strand 5
C
130 131anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 22first strand
Strand 2
C
146 150parallel
Strand 3
C
118 125anti-parallel
Strand 4
C
45 51anti-parallel
Strand 5
C
83 89anti-parallel
Strand 6
C
75 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il