Analysis of interatomic Contacts of Structural Units in PDB entry:
2VN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VN8 entry

There are 2 chains in PDB entry 2VN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5VAL 396
B
 GLN -2VAL 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 2VN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 57Right-handed 310
Helix 2
2
A
84 92Right-handed alpha
Helix 3
3
A
95 104Right-handed alpha
Helix 4
4
A
174 179Right-handed alpha
Helix 5
5
A
181 193Right-handed alpha
Helix 6
6
A
215 228Right-handed alpha
Helix 7
7
A
237 239Right-handed 310
Helix 8
8
A
240 247Right-handed alpha
Helix 9
9
A
259 266Right-handed alpha
Helix 10
10
A
280 285Right-handed alpha
Helix 11
11
A
286 288Right-handed 310
Helix 12
12
A
303 312Right-handed alpha
Helix 13
13
A
312 334Right-handed alpha
Helix 14
14
A
346 359Right-handed alpha
Helix 15
15
A
374 385Right-handed alpha
Helix 16
16
B
53 57Right-handed 310
Helix 17
17
B
84 92Right-handed alpha
Helix 18
18
B
95 104Right-handed alpha
Helix 19
19
B
174 180Right-handed alpha
Helix 20
20
B
181 193Right-handed alpha
Helix 21
21
B
215 228Right-handed alpha
Helix 22
22
B
237 239Right-handed 310
Helix 23
23
B
240 247Right-handed alpha
Helix 24
24
B
259 266Right-handed alpha
Helix 25
25
B
278 284Right-handed 310
Helix 26
26
B
284 288Right-handed 310
Helix 27
27
B
303 312Right-handed alpha
Helix 28
28
B
312 334Right-handed alpha
Helix 29
29
B
346 359Right-handed alpha
Helix 30
30
B
374 385Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2VN8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 47first strand
Strand 2
A
58 63anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
73 83anti-parallel
Strand 3
A
122 130anti-parallel
Strand 4
A
142 146anti-parallel
Strand 5
A
166 168anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
73 83anti-parallel
Strand 3
A
390 394anti-parallel
Strand 4
A
366 371parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
231 236parallel
Strand 3
A
207 211parallel
Strand 4
A
272 275parallel
Strand 5
A
296 299parallel
Strand 6
A
337 340parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-1 47first strand
Strand 2
B
58 63anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 162first strand
Strand 2
B
73 83anti-parallel
Strand 3
B
122 130anti-parallel
Strand 4
B
142 146anti-parallel
Strand 5
B
166 168anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 162first strand
Strand 2
B
73 83anti-parallel
Strand 3
B
390 394anti-parallel
Strand 4
B
366 371parallel
Back to list of sheets
Back to top of page

There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
231 236parallel
Strand 3
B
207 211parallel
Strand 4
B
272 275parallel
Strand 5
B
296 299parallel
Strand 6
B
337 340parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il