Analysis of interatomic Contacts of Structural Units in PDB entry:
2VNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VNC entry

There are 2 chains in PDB entry 2VNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9LEU 718
B
 THR 7SER 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2VNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 96Right-handed 310
Helix 2
2
A
120 124Right-handed 310
Helix 3
3
A
132 136Right-handed 310
Helix 4
4
A
160 165Right-handed alpha
Helix 5
5
A
170 174Right-handed 310
Helix 6
6
A
180 186Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
198 203Right-handed alpha
Helix 9
9
A
204 215Right-handed alpha
Helix 10
10
A
230 235Right-handed alpha
Helix 11
11
A
253 257Right-handed 310
Helix 12
12
A
263 279Right-handed alpha
Helix 13
13
A
303 309Right-handed alpha
Helix 14
14
A
337 354Right-handed alpha
Helix 15
15
A
364 375Right-handed alpha
Helix 16
16
A
377 388Right-handed alpha
Helix 17
17
A
421 434Right-handed alpha
Helix 18
18
A
439 447Right-handed alpha
Helix 19
19
A
459 461Right-handed 310
Helix 20
20
A
474 479Right-handed alpha
Helix 21
21
A
486 490Right-handed 310
Helix 22
22
A
513 532Right-handed alpha
Helix 23
23
A
543 547Right-handed 310
Helix 24
24
A
571 590Right-handed alpha
Helix 25
25
A
591 595Right-handed 310
Helix 26
26
A
691 695Right-handed alpha
Helix 27
27
B
93 96Right-handed 310
Helix 28
28
B
160 165Right-handed alpha
Helix 29
29
B
180 186Right-handed alpha
Helix 30
30
B
198 203Right-handed alpha
Helix 31
31
B
205 215Right-handed alpha
Helix 32
32
B
230 235Right-handed alpha
Helix 33
33
B
253 257Right-handed 310
Helix 34
34
B
263 280Right-handed alpha
Helix 35
35
B
303 308Right-handed alpha
Helix 36
36
B
337 354Right-handed alpha
Helix 37
37
B
364 374Right-handed alpha
Helix 38
38
B
377 388Right-handed alpha
Helix 39
39
B
423 432Right-handed alpha
Helix 40
40
B
440 448Right-handed alpha
Helix 41
41
B
459 461Right-handed 310
Helix 42
42
B
519 524Right-handed alpha
Helix 43
43
B
525 532Right-handed alpha
Helix 44
44
B
577 589Right-handed alpha
Helix 45
45
B
591 595Right-handed 310
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There are 15 sheets in PDB entry 2VNC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
64 66anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
149 150anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
97 98anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
218 221parallel
Strand 3
A
282 287parallel
Strand 4
A
359 362parallel
Strand 5
A
395 398parallel
Strand 6
A
417 420parallel
Strand 7
A
463 465parallel
Strand 8
A
537 541parallel
Strand 9
A
176 179parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
631 632anti-parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 616first strand
Strand 2
A
634 639anti-parallel
Strand 3
A
659 664anti-parallel
Strand 4
A
709 717anti-parallel
Strand 5
A
678 684anti-parallel
Strand 6
A
696 698anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 644first strand
Strand 2
A
654 655anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 673first strand
Strand 2
A
702 705anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
69 75anti-parallel
Strand 4
B
64 66anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
149 150anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
97 98anti-parallel
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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
218 221parallel
Strand 3
B
282 287parallel
Strand 4
B
359 362parallel
Strand 5
B
395 398parallel
Strand 6
B
417 420parallel
Strand 7
B
463 466parallel
Strand 8
B
537 541parallel
Strand 9
B
176 179parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
319 323anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 617first strand
Strand 2
B
621 622anti-parallel
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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 639first strand
Strand 2
B
659 664anti-parallel
Strand 3
B
710 714anti-parallel
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