Analysis of interatomic Contacts of Structural Units in PDB entry:
2VNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VNK entry

There are 4 chains in PDB entry 2VNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 16ILE 272
B
 PRO 16GLY 269
C
 PRO 16ILE 272
D
 PRO 16GLY 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2VNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 94Right-handed alpha
Helix 2
2
A
113 116Right-handed 310
Helix 3
3
A
132 139Right-handed alpha
Helix 4
4
A
141 148Right-handed alpha
Helix 5
5
A
160 162Right-handed 310
Helix 6
6
A
163 176Right-handed alpha
Helix 7
7
A
176 184Right-handed alpha
Helix 8
8
A
203 211Right-handed alpha
Helix 9
9
A
211 218Right-handed alpha
Helix 10
10
A
234 248Right-handed alpha
Helix 11
11
B
89 94Right-handed alpha
Helix 12
12
B
113 116Right-handed 310
Helix 13
13
B
132 139Right-handed alpha
Helix 14
14
B
141 148Right-handed alpha
Helix 15
15
B
159 162Right-handed 310
Helix 16
16
B
163 176Right-handed alpha
Helix 17
17
B
176 184Right-handed alpha
Helix 18
18
B
203 211Right-handed alpha
Helix 19
19
B
211 218Right-handed alpha
Helix 20
20
B
234 248Right-handed alpha
Helix 21
21
C
89 94Right-handed alpha
Helix 22
22
C
113 116Right-handed 310
Helix 23
23
C
132 139Right-handed alpha
Helix 24
24
C
141 148Right-handed alpha
Helix 25
25
C
159 162Right-handed 310
Helix 26
26
C
163 176Right-handed alpha
Helix 27
27
C
176 184Right-handed alpha
Helix 28
28
C
203 211Right-handed alpha
Helix 29
29
C
211 218Right-handed alpha
Helix 30
30
C
234 248Right-handed alpha
Helix 31
31
D
89 94Right-handed alpha
Helix 32
32
D
113 116Right-handed 310
Helix 33
33
D
132 139Right-handed alpha
Helix 34
34
D
141 148Right-handed alpha
Helix 35
35
D
159 162Right-handed 310
Helix 36
36
D
163 176Right-handed alpha
Helix 37
37
D
176 184Right-handed alpha
Helix 38
38
D
203 211Right-handed alpha
Helix 39
39
D
211 218Right-handed alpha
Helix 40
40
D
234 248Right-handed alpha
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There are 8 sheets in PDB entry 2VNK. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
101 104anti-parallel
Strand 4
A
18 28anti-parallel
Strand 5
A
31 37anti-parallel
Strand 6
A
76 82anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 193first strand
Strand 2
A
150 157parallel
Strand 3
A
122 128parallel
Strand 4
A
227 233parallel
Strand 5
A
261 265parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 67first strand
Strand 2
B
49 55anti-parallel
Strand 3
B
101 104anti-parallel
Strand 4
B
18 28anti-parallel
Strand 5
B
31 37anti-parallel
Strand 6
B
76 82anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 193first strand
Strand 2
B
150 157parallel
Strand 3
B
122 128parallel
Strand 4
B
227 233parallel
Strand 5
B
261 265parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 67first strand
Strand 2
C
49 55anti-parallel
Strand 3
C
101 104anti-parallel
Strand 4
C
18 28anti-parallel
Strand 5
C
31 37anti-parallel
Strand 6
C
76 82anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 193first strand
Strand 2
C
150 157parallel
Strand 3
C
122 128parallel
Strand 4
C
227 233parallel
Strand 5
C
261 265parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 67first strand
Strand 2
D
49 55anti-parallel
Strand 3
D
101 104anti-parallel
Strand 4
D
18 28anti-parallel
Strand 5
D
31 37anti-parallel
Strand 6
D
76 82anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 193first strand
Strand 2
D
150 157parallel
Strand 3
D
122 128parallel
Strand 4
D
227 233parallel
Strand 5
D
261 265parallel
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