Analysis of interatomic Contacts of Structural Units in PDB entry:
2VNS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VNS entry

There are 2 chains in PDB entry 2VNS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29LEU 208
B
 PRO 29LEU 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2VNS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 50Right-handed alpha
Helix 2
2
A
60 68Right-handed alpha
Helix 3
3
A
77 81Right-handed alpha
Helix 4
4
A
92 96Right-handed 310
Helix 5
5
A
96 101Right-handed 310
Helix 6
6
A
102 107Right-handed alpha
Helix 7
7
A
118 125Right-handed alpha
Helix 8
8
A
128 137Right-handed alpha
Helix 9
9
A
150 156Right-handed alpha
Helix 10
10
A
171 185Right-handed alpha
Helix 11
11
A
194 196Right-handed 310
Helix 12
12
A
197 204Right-handed alpha
Helix 13
13
B
37 50Right-handed alpha
Helix 14
14
B
60 66Right-handed alpha
Helix 15
15
B
77 81Right-handed alpha
Helix 16
16
B
92 96Right-handed 310
Helix 17
17
B
96 101Right-handed 310
Helix 18
18
B
102 107Right-handed alpha
Helix 19
19
B
118 125Right-handed alpha
Helix 20
20
B
128 137Right-handed alpha
Helix 21
21
B
150 156Right-handed alpha
Helix 22
22
B
171 185Right-handed alpha
Helix 23
23
B
194 196Right-handed 310
Helix 24
24
B
197 204Right-handed alpha
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There are 2 sheets in PDB entry 2VNS. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
54 58parallel
Strand 3
A
31 34parallel
Strand 4
A
86 89parallel
Strand 5
A
110 113parallel
Strand 6
A
141 145parallel
Strand 7
A
164 169anti-parallel
Strand 8
A
188 191parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
54 58parallel
Strand 3
B
31 34parallel
Strand 4
B
86 89parallel
Strand 5
B
110 113parallel
Strand 6
B
141 145parallel
Strand 7
B
163 169anti-parallel
Strand 8
B
187 191parallel
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