Analysis of interatomic Contacts of Structural Units in PDB entry:
2VOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VOJ entry

There are 3 chains in PDB entry 2VOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 371
C
 MET 1ALA 371
E
 MET 1ALA 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2VOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
40 44Right-handed 310
Helix 3
3
A
46 53Right-handed alpha
Helix 4
4
A
60 66Right-handed alpha
Helix 5
5
A
78 85Right-handed 310
Helix 6
6
A
96 99Right-handed 310
Helix 7
7
A
100 111Right-handed alpha
Helix 8
8
A
118 120Right-handed 310
Helix 9
9
A
130 149Right-handed alpha
Helix 10
10
A
150 154Right-handed 310
Helix 11
11
A
177 190Right-handed alpha
Helix 12
12
A
200 211Right-handed alpha
Helix 13
13
A
221 232Right-handed alpha
Helix 14
14
A
251 256Right-handed alpha
Helix 15
15
A
268 273Right-handed 310
Helix 16
16
A
300 304Right-handed 310
Helix 17
17
A
305 342Right-handed alpha
Helix 18
18
A
352 359Right-handed alpha
Helix 19
19
C
19 29Right-handed alpha
Helix 20
20
C
46 53Right-handed alpha
Helix 21
21
C
60 66Right-handed alpha
Helix 22
22
C
78 85Right-handed 310
Helix 23
23
C
96 99Right-handed 310
Helix 24
24
C
100 111Right-handed alpha
Helix 25
25
C
118 120Right-handed 310
Helix 26
26
C
130 149Right-handed alpha
Helix 27
27
C
150 154Right-handed 310
Helix 28
28
C
177 190Right-handed alpha
Helix 29
29
C
200 211Right-handed alpha
Helix 30
30
C
221 232Right-handed alpha
Helix 31
31
C
251 257Right-handed alpha
Helix 32
32
C
268 273Right-handed 310
Helix 33
33
C
300 304Right-handed 310
Helix 34
34
C
305 341Right-handed alpha
Helix 35
35
C
352 359Right-handed alpha
Helix 36
36
E
19 29Right-handed alpha
Helix 37
37
E
46 53Right-handed alpha
Helix 38
38
E
60 66Right-handed alpha
Helix 39
39
E
78 85Right-handed 310
Helix 40
40
E
96 99Right-handed 310
Helix 41
41
E
100 111Right-handed alpha
Helix 42
42
E
118 120Right-handed 310
Helix 43
43
E
130 149Right-handed alpha
Helix 44
44
E
150 154Right-handed 310
Helix 45
45
E
177 190Right-handed alpha
Helix 46
46
E
200 211Right-handed alpha
Helix 47
47
E
221 232Right-handed alpha
Helix 48
48
E
251 257Right-handed alpha
Helix 49
49
E
268 273Right-handed 310
Helix 50
50
E
300 304Right-handed 310
Helix 51
51
E
305 341Right-handed alpha
Helix 52
52
E
352 359Right-handed alpha
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There are 6 sheets in PDB entry 2VOJ. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB, EA, EB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
32 36parallel
Strand 3
A
2 5parallel
Strand 4
A
70 72parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
Strand 7
A
343 346anti-parallel
Strand 8
A
349 350anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
193 198parallel
Strand 3
A
170 174parallel
Strand 4
A
234 237parallel
Strand 5
A
263 266parallel
Strand 6
A
293 296parallel
Strand 7
A
287 290anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
32 36parallel
Strand 3
C
2 5parallel
Strand 4
C
70 72parallel
Strand 5
C
90 93parallel
Strand 6
C
113 116parallel
Strand 7
C
343 346anti-parallel
Strand 8
C
349 350anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 219first strand
Strand 2
C
193 198parallel
Strand 3
C
170 174parallel
Strand 4
C
234 237parallel
Strand 5
C
263 266parallel
Strand 6
C
293 296parallel
Strand 7
C
287 290anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
32 36parallel
Strand 3
E
2 5parallel
Strand 4
E
70 72parallel
Strand 5
E
90 93parallel
Strand 6
E
113 116parallel
Strand 7
E
343 346anti-parallel
Strand 8
E
349 350anti-parallel
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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
216 219first strand
Strand 2
E
193 198parallel
Strand 3
E
170 174parallel
Strand 4
E
234 237parallel
Strand 5
E
263 266parallel
Strand 6
E
293 296parallel
Strand 7
E
287 290anti-parallel
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