Analysis of interatomic Contacts of Structural Units in PDB entry:
2VOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VOK entry

There are 2 chains in PDB entry 2VOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7LEU 192
B
 HIS 8LEU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2VOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 13Right-handed 310
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
B
10 13Right-handed 310
Helix 4
4
B
20 24Right-handed 310
Helix 5
5
B
100 103Right-handed 310
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There are 4 sheets in PDB entry 2VOK. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
187 189anti-parallel
Strand 4
A
69 75anti-parallel
Strand 5
A
133 139anti-parallel
Strand 6
A
144 149anti-parallel
Strand 7
A
155 160anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
169 174anti-parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
105 111anti-parallel
Strand 5
A
114 117anti-parallel
Strand 6
A
123 125anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
36 39anti-parallel
Strand 3
B
187 189anti-parallel
Strand 4
B
69 75anti-parallel
Strand 5
B
133 139anti-parallel
Strand 6
B
144 149anti-parallel
Strand 7
B
155 160anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
169 174anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
105 111anti-parallel
Strand 5
B
114 117anti-parallel
Strand 6
B
123 124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il