Analysis of interatomic Contacts of Structural Units in PDB entry:
2VOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VOR entry

There is 1 chain in PDB entry 2VOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24GLN 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2VOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 37Right-handed alpha
Helix 2
2
A
49 60Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
76 91Right-handed alpha
Helix 5
5
A
105 108Right-handed 310
Helix 6
6
A
118 142Right-handed alpha
Helix 7
7
A
152 168Right-handed alpha
Helix 8
8
A
210 219Right-handed alpha
Helix 9
9
A
220 222Right-handed 310
Helix 10
10
A
240 254Right-handed alpha
Helix 11
11
A
297 316Right-handed alpha
Helix 12
12
A
324 334Right-handed alpha
Helix 13
13
A
357 372Right-handed alpha
Helix 14
14
A
388 397Right-handed alpha
Helix 15
15
A
415 428Right-handed alpha
Helix 16
16
A
437 454Right-handed alpha
Helix 17
17
A
473 484Right-handed alpha
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There are 3 sheets in PDB entry 2VOR. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
110 112anti-parallel
Strand 3
A
95 98anti-parallel
Strand 4
A
172 176parallel
Strand 5
A
68 72parallel
Strand 6
A
193 196parallel
Strand 7
A
233 236parallel
Strand 8
A
257 260parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 273first strand
Strand 2
A
276 282anti-parallel
Strand 3
A
287 293anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
349 352anti-parallel
Strand 3
A
466 471parallel
Strand 4
A
376 381parallel
Strand 5
A
402 405parallel
Strand 6
A
432 434parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il