Analysis of interatomic Contacts of Structural Units in PDB entry:
2VOU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VOU entry

There are 3 chains in PDB entry 2VOU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 394
B
 SER 2VAL 388
C
 SER 2VAL 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2VOU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
51 61Right-handed alpha
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
98 110Right-handed alpha
Helix 5
5
A
153 161Right-handed alpha
Helix 6
6
A
182 190Right-handed alpha
Helix 7
7
A
230 237Right-handed alpha
Helix 8
8
A
250 254Right-handed 310
Helix 9
9
A
255 267Right-handed alpha
Helix 10
10
A
270 280Right-handed alpha
Helix 11
11
A
305 308Right-handed 310
Helix 12
12
A
312 316Right-handed 310
Helix 13
13
A
317 336Right-handed alpha
Helix 14
14
A
338 369Right-handed alpha
Helix 15
15
A
378 382Right-handed 310
Helix 16
16
B
14 27Right-handed alpha
Helix 17
17
B
51 61Right-handed alpha
Helix 18
18
B
64 68Right-handed 310
Helix 19
19
B
98 110Right-handed alpha
Helix 20
20
B
153 161Right-handed alpha
Helix 21
21
B
182 190Right-handed alpha
Helix 22
22
B
230 237Right-handed alpha
Helix 23
23
B
250 254Right-handed 310
Helix 24
24
B
255 267Right-handed alpha
Helix 25
25
B
270 280Right-handed alpha
Helix 26
26
B
305 308Right-handed 310
Helix 27
27
B
312 316Right-handed 310
Helix 28
28
B
317 336Right-handed alpha
Helix 29
29
B
338 371Right-handed alpha
Helix 30
30
B
378 382Right-handed 310
Helix 31
31
C
14 27Right-handed alpha
Helix 32
32
C
51 61Right-handed alpha
Helix 33
33
C
64 68Right-handed 310
Helix 34
34
C
98 110Right-handed alpha
Helix 35
35
C
153 161Right-handed alpha
Helix 36
36
C
182 190Right-handed alpha
Helix 37
37
C
230 237Right-handed alpha
Helix 38
38
C
250 254Right-handed 310
Helix 39
39
C
255 267Right-handed alpha
Helix 40
40
C
270 280Right-handed alpha
Helix 41
41
C
305 308Right-handed 310
Helix 42
42
C
312 316Right-handed 310
Helix 43
43
C
317 336Right-handed alpha
Helix 44
44
C
338 370Right-handed alpha
Helix 45
45
C
378 382Right-handed 310
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There are 12 sheets in PDB entry 2VOU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
30 34parallel
Strand 3
A
7 11parallel
Strand 4
A
144 147parallel
Strand 5
A
301 303parallel
Strand 6
A
297 298anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
95 97anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
192 198parallel
Strand 4
A
201 208anti-parallel
Strand 5
A
218 226anti-parallel
Strand 6
A
165 176anti-parallel
Strand 7
A
284 290anti-parallel
Strand 8
A
248 249anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
139 142anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
30 34parallel
Strand 3
B
7 11parallel
Strand 4
B
144 147parallel
Strand 5
B
301 303parallel
Strand 6
B
297 298anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
95 97anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 90first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
192 198parallel
Strand 4
B
201 208anti-parallel
Strand 5
B
218 226anti-parallel
Strand 6
B
165 176anti-parallel
Strand 7
B
284 290anti-parallel
Strand 8
B
248 249anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
130 134anti-parallel
Strand 3
B
139 142anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 115first strand
Strand 2
C
30 34parallel
Strand 3
C
7 11parallel
Strand 4
C
144 147parallel
Strand 5
C
301 303parallel
Strand 6
C
297 298anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 49first strand
Strand 2
C
95 97anti-parallel
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There are 8 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 90first strand
Strand 2
C
74 79anti-parallel
Strand 3
C
192 198parallel
Strand 4
C
201 208anti-parallel
Strand 5
C
218 226anti-parallel
Strand 6
C
165 176anti-parallel
Strand 7
C
284 290anti-parallel
Strand 8
C
248 249anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 125first strand
Strand 2
C
130 134anti-parallel
Strand 3
C
139 142anti-parallel
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