Analysis of interatomic Contacts of Structural Units in PDB entry:
2VOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VOY entry

There are 12 chains in PDB entry 2VOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 80
B
 TYR 36TRP 77
C
 TRP 967ALA 988
D
 TRP 832TRP 854
E
 THR 86ALA 115
F
 GLU 214GLY 326
G
 GLU 243HIS 278
H
 ILE 289LEU 336
I
 ASP 410GLN 663
J
 GLY 432THR 549
K
 GLU 749ALA 780
L
 PRO 789PHE 809
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2VOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
B
49 57Right-handed alpha
Helix 4
4
B
59 76Right-handed alpha
Helix 5
5
C
967 972Right-handed alpha
Helix 6
6
C
975 985Right-handed alpha
Helix 7
7
C
986 988Right-handed 310
Helix 8
8
D
832 854Right-handed alpha
Helix 9
9
E
89 104Right-handed alpha
Helix 10
10
F
214 223Right-handed alpha
Helix 11
11
F
241 243Right-handed 310
Helix 12
12
F
272 277Right-handed alpha
Helix 13
13
F
308 311Right-handed 310
Helix 14
14
F
312 326Right-handed alpha
Helix 15
15
G
247 275Right-handed alpha
Helix 16
16
H
293 298Right-handed alpha
Helix 17
17
H
298 306Right-handed alpha
Helix 18
18
H
310 328Right-handed alpha
Helix 19
19
I
410 418Right-handed alpha
Helix 20
20
A
1 430Right-handed alpha
Helix 21
21
I
553 562Right-handed alpha
Helix 22
22
I
575 587Right-handed alpha
Helix 23
23
I
596 598Right-handed 310
Helix 24
24
I
599 608Right-handed alpha
Helix 25
25
I
622 629Right-handed alpha
Helix 26
26
I
655 663Right-handed alpha
Helix 27
27
J
445 457Right-handed alpha
Helix 28
28
J
462 474Right-handed alpha
Helix 29
29
J
514 526Right-handed alpha
Helix 30
30
K
749 780Right-handed alpha
Helix 31
31
L
789 798Right-handed alpha
Helix 32
32
L
800 808Right-handed alpha
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There are 5 sheets in PDB entry 2VOY. Click on sheet of interest to get list of strands forming it: AA, FA, FB, HA, JA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
67 70anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
234 239first strand
Strand 2
F
226 231anti-parallel
Strand 3
F
248 251anti-parallel
Strand 4
F
301 307anti-parallel
Strand 5
F
260 265anti-parallel
Strand 6
F
289 290anti-parallel
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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
282 284first strand
Strand 2
F
268 271anti-parallel
Strand 3
F
295 296anti-parallel
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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
332 333first strand
Strand 2
I
648 650anti-parallel
Strand 3
I
631 635parallel
Strand 4
I
613 617parallel
Strand 5
I
420 423parallel
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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
435 441first strand
Strand 2
J
539 547anti-parallel
Strand 3
J
530 536anti-parallel
Strand 4
J
498 501anti-parallel
Strand 5
J
492 495anti-parallel
Strand 6
J
485 488anti-parallel
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