Analysis of interatomic Contacts of Structural Units in PDB entry:
2VP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VP1 entry

There are 2 chains in PDB entry 2VP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 34GLN 346
B
 ARG 34GLN 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2VP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 53Right-handed alpha
Helix 2
2
A
63 75Right-handed alpha
Helix 3
3
A
76 78Right-handed 310
Helix 4
4
A
87 97Right-handed alpha
Helix 5
5
A
105 112Right-handed alpha
Helix 6
6
A
113 116Right-handed 310
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
148 153Right-handed 310
Helix 9
9
A
153 157Right-handed 310
Helix 10
10
A
167 182Right-handed alpha
Helix 11
11
A
182 196Right-handed alpha
Helix 12
12
A
204 214Right-handed alpha
Helix 13
13
A
224 233Right-handed alpha
Helix 14
14
A
235 244Right-handed alpha
Helix 15
15
A
274 286Right-handed alpha
Helix 16
16
A
287 297Right-handed alpha
Helix 17
17
A
310 315Right-handed alpha
Helix 18
18
A
326 332Right-handed alpha
Helix 19
19
A
332 344Right-handed alpha
Helix 20
20
B
46 55Right-handed alpha
Helix 21
21
B
63 75Right-handed alpha
Helix 22
22
B
76 78Right-handed 310
Helix 23
23
B
87 97Right-handed alpha
Helix 24
24
B
105 112Right-handed alpha
Helix 25
25
B
113 116Right-handed 310
Helix 26
26
B
148 153Right-handed 310
Helix 27
27
B
153 157Right-handed 310
Helix 28
28
B
167 182Right-handed alpha
Helix 29
29
B
182 196Right-handed alpha
Helix 30
30
B
204 214Right-handed alpha
Helix 31
31
B
224 233Right-handed alpha
Helix 32
32
B
235 244Right-handed alpha
Helix 33
33
B
274 285Right-handed alpha
Helix 34
34
B
287 297Right-handed alpha
Helix 35
35
B
310 315Right-handed alpha
Helix 36
36
B
327 332Right-handed alpha
Helix 37
37
B
332 344Right-handed alpha
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There are 4 sheets in PDB entry 2VP1. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
35 40parallel
Strand 3
A
82 85parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
124 136anti-parallel
Strand 6
A
301 302anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
35 40parallel
Strand 3
A
82 85parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
124 136anti-parallel
Strand 6
A
219 223anti-parallel
Strand 7
A
160 161parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
36 40parallel
Strand 3
B
82 85parallel
Strand 4
B
261 269anti-parallel
Strand 5
B
100 101anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
36 40parallel
Strand 3
B
82 85parallel
Strand 4
B
261 269anti-parallel
Strand 5
B
124 136anti-parallel
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