Analysis of interatomic Contacts of Structural Units in PDB entry:
2VP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VP8 entry

There are 2 chains in PDB entry 2VP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27THR 311
B
 HIS 29PRO 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2VP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 77Right-handed alpha
Helix 2
2
A
96 115Right-handed alpha
Helix 3
3
A
126 137Right-handed alpha
Helix 4
4
A
151 160Right-handed alpha
Helix 5
5
A
185 207Right-handed alpha
Helix 6
6
A
210 212Right-handed 310
Helix 7
7
A
226 235Right-handed alpha
Helix 8
8
A
235 241Right-handed alpha
Helix 9
9
A
267 281Right-handed alpha
Helix 10
10
A
290 305Right-handed alpha
Helix 11
11
B
64 77Right-handed alpha
Helix 12
12
B
97 115Right-handed alpha
Helix 13
13
B
126 137Right-handed alpha
Helix 14
14
B
151 160Right-handed alpha
Helix 15
15
B
185 208Right-handed alpha
Helix 16
16
B
210 212Right-handed 310
Helix 17
17
B
226 235Right-handed alpha
Helix 18
18
B
235 242Right-handed alpha
Helix 19
19
B
266 281Right-handed alpha
Helix 20
20
B
290 307Right-handed alpha
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There are 4 sheets in PDB entry 2VP8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
35 37anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
162 166parallel
Strand 3
A
140 143parallel
Strand 4
A
119 123parallel
Strand 5
A
81 84parallel
Strand 6
A
43 48parallel
Strand 7
A
285 288parallel
Strand 8
A
247 248parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
35 37anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
162 166parallel
Strand 3
B
140 142parallel
Strand 4
B
119 123parallel
Strand 5
B
81 85parallel
Strand 6
B
43 49parallel
Strand 7
B
285 288parallel
Strand 8
B
247 248parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il