Analysis of interatomic Contacts of Structural Units in PDB entry:
2VP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VP9 entry

There are 8 chains in PDB entry 2VP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12ASP 208
B
 THR 12ASP 208
C
 THR 12ASP 208
D
 THR 12ASP 208
E
 THR 12ASP 208
F
 THR 12ASP 208
G
 THR 12ASP 208
H
 THR 12ASP 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 83 helices in PDB entry 2VP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 39Right-handed alpha
Helix 2
2
A
40 44Right-handed 310
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
64 72Right-handed alpha
Helix 5
5
A
72 94Right-handed alpha
Helix 6
6
A
106 113Right-handed alpha
Helix 7
7
A
113 121Right-handed alpha
Helix 8
8
A
125 143Right-handed alpha
Helix 9
9
A
156 167Right-handed alpha
Helix 10
10
A
171 175Right-handed 310
Helix 11
11
A
176 192Right-handed alpha
Helix 12
12
B
32 39Right-handed alpha
Helix 13
13
B
40 44Right-handed 310
Helix 14
14
B
53 59Right-handed alpha
Helix 15
15
B
64 72Right-handed alpha
Helix 16
16
B
72 94Right-handed alpha
Helix 17
17
B
106 113Right-handed alpha
Helix 18
18
B
113 121Right-handed alpha
Helix 19
19
B
125 143Right-handed alpha
Helix 20
20
B
156 167Right-handed alpha
Helix 21
21
B
176 192Right-handed alpha
Helix 22
22
C
32 39Right-handed alpha
Helix 23
23
C
40 44Right-handed 310
Helix 24
24
C
53 59Right-handed alpha
Helix 25
25
C
64 72Right-handed alpha
Helix 26
26
C
72 94Right-handed alpha
Helix 27
27
C
106 113Right-handed alpha
Helix 28
28
C
113 121Right-handed alpha
Helix 29
29
C
125 143Right-handed alpha
Helix 30
30
C
156 166Right-handed alpha
Helix 31
31
C
176 192Right-handed alpha
Helix 32
32
D
32 39Right-handed alpha
Helix 33
33
D
40 44Right-handed 310
Helix 34
34
D
53 59Right-handed alpha
Helix 35
35
D
64 72Right-handed alpha
Helix 36
36
D
72 94Right-handed alpha
Helix 37
37
D
106 113Right-handed alpha
Helix 38
38
D
113 121Right-handed alpha
Helix 39
39
D
125 143Right-handed alpha
Helix 40
40
D
156 166Right-handed alpha
Helix 41
41
D
171 175Right-handed 310
Helix 42
42
D
176 192Right-handed alpha
Helix 43
43
E
32 39Right-handed alpha
Helix 44
44
E
40 44Right-handed 310
Helix 45
45
E
53 59Right-handed alpha
Helix 46
46
E
64 72Right-handed alpha
Helix 47
47
E
72 94Right-handed alpha
Helix 48
48
E
106 113Right-handed alpha
Helix 49
49
E
113 121Right-handed alpha
Helix 50
50
E
125 143Right-handed alpha
Helix 51
51
E
156 167Right-handed alpha
Helix 52
52
E
176 192Right-handed alpha
Helix 53
53
F
32 39Right-handed alpha
Helix 54
54
F
40 44Right-handed 310
Helix 55
55
F
53 59Right-handed alpha
Helix 56
56
F
64 72Right-handed alpha
Helix 57
57
F
72 94Right-handed alpha
Helix 58
58
F
106 113Right-handed alpha
Helix 59
59
F
113 121Right-handed alpha
Helix 60
60
F
125 143Right-handed alpha
Helix 61
61
F
156 167Right-handed alpha
Helix 62
62
F
176 192Right-handed alpha
Helix 63
63
G
32 39Right-handed alpha
Helix 64
64
G
40 44Right-handed 310
Helix 65
65
G
53 59Right-handed alpha
Helix 66
66
G
64 72Right-handed alpha
Helix 67
67
G
72 94Right-handed alpha
Helix 68
68
G
106 113Right-handed alpha
Helix 69
69
G
113 121Right-handed alpha
Helix 70
70
G
125 143Right-handed alpha
Helix 71
71
G
156 167Right-handed alpha
Helix 72
72
G
176 192Right-handed alpha
Helix 73
73
H
32 39Right-handed alpha
Helix 74
74
H
40 44Right-handed 310
Helix 75
75
H
53 59Right-handed alpha
Helix 76
76
H
64 72Right-handed alpha
Helix 77
77
H
72 94Right-handed alpha
Helix 78
78
H
106 113Right-handed alpha
Helix 79
79
H
113 121Right-handed alpha
Helix 80
80
H
125 143Right-handed alpha
Helix 81
81
H
156 167Right-handed alpha
Helix 82
82
H
170 175Right-handed 310
Helix 83
83
H
176 192Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2VP9. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
100 104parallel
Strand 3
A
21 27parallel
Strand 4
A
149 154parallel
Strand 5
A
201 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
100 104parallel
Strand 3
B
21 27parallel
Strand 4
B
149 154parallel
Strand 5
B
201 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
100 104parallel
Strand 3
C
21 27parallel
Strand 4
C
149 154parallel
Strand 5
C
201 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
100 104parallel
Strand 3
D
21 27parallel
Strand 4
D
149 154parallel
Strand 5
D
201 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 50first strand
Strand 2
E
100 104parallel
Strand 3
E
21 27parallel
Strand 4
E
149 154parallel
Strand 5
E
202 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
47 50first strand
Strand 2
F
100 104parallel
Strand 3
F
21 27parallel
Strand 4
F
149 154parallel
Strand 5
F
201 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
47 50first strand
Strand 2
G
100 104parallel
Strand 3
G
21 26parallel
Strand 4
G
149 154parallel
Strand 5
G
201 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
47 50first strand
Strand 2
H
100 104parallel
Strand 3
H
21 27parallel
Strand 4
H
149 154parallel
Strand 5
H
201 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il