Analysis of interatomic Contacts of Structural Units in PDB entry:
2VPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VPJ entry

There is 1 chain in PDB entry 2VPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 279GLU 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2VPJ

There are 6 sheets in PDB entry 2VPJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
299 303anti-parallel
Strand 3
A
281 286anti-parallel
Strand 4
A
561 566anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
289 290anti-parallel
Strand 3
A
546 558anti-parallel
Strand 4
A
534 541anti-parallel
Strand 5
A
521 525anti-parallel
Strand 6
A
514 518anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
330 334anti-parallel
Strand 3
A
346 350anti-parallel
Strand 4
A
360 362anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 377first strand
Strand 2
A
380 384anti-parallel
Strand 3
A
395 400anti-parallel
Strand 4
A
405 411anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 424first strand
Strand 2
A
427 431anti-parallel
Strand 3
A
443 446anti-parallel
Strand 4
A
453 456anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 471first strand
Strand 2
A
474 478anti-parallel
Strand 3
A
490 494anti-parallel
Strand 4
A
499 503anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il