Analysis of interatomic Contacts of Structural Units in PDB entry:
2VPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VPQ entry

There are 2 chains in PDB entry 2VPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASN 448
B
 LYS 2ASP 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2VPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
38 44Right-handed alpha
Helix 4
4
A
54 58Right-handed 310
Helix 5
5
A
61 72Right-handed alpha
Helix 6
6
A
87 96Right-handed alpha
Helix 7
7
A
105 114Right-handed alpha
Helix 8
8
A
114 125Right-handed alpha
Helix 9
9
A
139 151Right-handed alpha
Helix 10
10
A
172 192Right-handed alpha
Helix 11
11
A
247 265Right-handed alpha
Helix 12
12
A
296 305Right-handed alpha
Helix 13
13
A
307 317Right-handed alpha
Helix 14
14
A
324 328Right-handed 310
Helix 15
15
A
343 347Right-handed 310
Helix 16
16
A
395 409Right-handed alpha
Helix 17
17
A
418 427Right-handed alpha
Helix 18
18
A
428 434Right-handed alpha
Helix 19
19
B
9 23Right-handed alpha
Helix 20
20
B
34 36Right-handed 310
Helix 21
21
B
38 44Right-handed alpha
Helix 22
22
B
54 58Right-handed 310
Helix 23
23
B
61 72Right-handed alpha
Helix 24
24
B
87 97Right-handed alpha
Helix 25
25
B
105 114Right-handed alpha
Helix 26
26
B
114 125Right-handed alpha
Helix 27
27
B
139 151Right-handed alpha
Helix 28
28
B
172 192Right-handed alpha
Helix 29
29
B
247 265Right-handed alpha
Helix 30
30
B
296 305Right-handed alpha
Helix 31
31
B
307 317Right-handed alpha
Helix 32
32
B
324 328Right-handed 310
Helix 33
33
B
343 347Right-handed 310
Helix 34
34
B
395 410Right-handed alpha
Helix 35
35
B
418 427Right-handed alpha
Helix 36
36
B
428 434Right-handed alpha
Helix 37
37
B
439 444Right-handed alpha
Helix 38
38
B
445 449Right-handed 310
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There are 8 sheets in PDB entry 2VPQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
26 32parallel
Strand 3
A
3 6parallel
Strand 4
A
76 78parallel
Strand 5
A
100 101parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
154 158anti-parallel
Strand 3
A
196 200anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 290first strand
Strand 2
A
269 278anti-parallel
Strand 3
A
205 214anti-parallel
Strand 4
A
220 232anti-parallel
Strand 5
A
235 241anti-parallel
Strand 6
A
333 340anti-parallel
Strand 7
A
385 393anti-parallel
Strand 8
A
366 369anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
411 413anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
26 32parallel
Strand 3
B
3 6parallel
Strand 4
B
76 78parallel
Strand 5
B
100 101parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 170first strand
Strand 2
B
154 158anti-parallel
Strand 3
B
196 200anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 290first strand
Strand 2
B
269 278anti-parallel
Strand 3
B
205 214anti-parallel
Strand 4
B
220 232anti-parallel
Strand 5
B
235 241anti-parallel
Strand 6
B
333 340anti-parallel
Strand 7
B
385 393anti-parallel
Strand 8
B
366 370anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
411 413anti-parallel
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