Analysis of interatomic Contacts of Structural Units in PDB entry:
2VPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VPT entry

There is 1 chain in PDB entry 2VPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 34GLY 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 2VPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 48Right-handed alpha
Helix 2
2
A
57 68Right-handed alpha
Helix 3
3
A
97 113Right-handed alpha
Helix 4
4
A
122 130Right-handed alpha
Helix 5
5
A
133 148Right-handed alpha
Helix 6
6
A
162 164Right-handed 310
Helix 7
7
A
165 170Right-handed alpha
Helix 8
8
A
171 182Right-handed alpha
Helix 9
9
A
190 194Right-handed 310
Helix 10
10
A
197 202Right-handed alpha
Helix 11
11
A
210 234Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2VPT. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
35 42parallel
Strand 3
A
116 120parallel
Strand 4
A
152 156parallel
Strand 5
A
186 189parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
35 42parallel
Strand 3
A
89 92parallel
Strand 4
A
78 79anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il