Analysis of interatomic Contacts of Structural Units in PDB entry:
2VPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VPY entry

There are 6 chains in PDB entry 2VPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30ARG 764
B
 MET 1HIS 194
C
 ALA 2GLY 252
E
 ALA 30ARG 764
F
 MET 1HIS 194
G
 ALA 1GLY 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 2VPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
79 85Right-handed alpha
Helix 3
3
A
86 91Right-handed 310
Helix 4
4
A
116 135Right-handed alpha
Helix 5
5
A
136 140Right-handed 310
Helix 6
6
A
148 153Right-handed alpha
Helix 7
7
A
155 161Right-handed alpha
Helix 8
8
A
167 172Right-handed alpha
Helix 9
9
A
174 185Right-handed alpha
Helix 10
10
A
196 200Right-handed 310
Helix 11
11
A
215 228Right-handed alpha
Helix 12
12
A
242 246Right-handed 310
Helix 13
13
A
256 271Right-handed alpha
Helix 14
14
A
275 282Right-handed alpha
Helix 15
15
A
286 293Right-handed alpha
Helix 16
16
A
297 306Right-handed alpha
Helix 17
17
A
308 321Right-handed alpha
Helix 18
18
A
340 355Right-handed alpha
Helix 19
19
A
422 427Right-handed alpha
Helix 20
20
A
441 446Right-handed alpha
Helix 21
21
A
448 458Right-handed alpha
Helix 22
22
A
517 529Right-handed alpha
Helix 23
23
A
539 552Right-handed alpha
Helix 24
24
A
554 561Right-handed alpha
Helix 25
25
A
572 577Right-handed alpha
Helix 26
26
A
593 601Right-handed alpha
Helix 27
27
A
637 642Right-handed alpha
Helix 28
28
A
652 659Right-handed alpha
Helix 29
29
A
751 757Right-handed alpha
Helix 30
30
B
17 27Right-handed alpha
Helix 31
31
B
94 100Right-handed alpha
Helix 32
32
B
119 125Right-handed alpha
Helix 33
33
B
129 134Right-handed alpha
Helix 34
34
B
150 159Right-handed alpha
Helix 35
35
B
188 192Right-handed 310
Helix 36
36
C
15 42Right-handed alpha
Helix 37
37
C
45 66Right-handed alpha
Helix 38
38
C
75 80Right-handed 310
Helix 39
39
C
87 108Right-handed alpha
Helix 40
40
C
116 137Right-handed alpha
Helix 41
41
C
147 167Right-handed alpha
Helix 42
42
C
174 190Right-handed alpha
Helix 43
43
C
191 194Right-handed 310
Helix 44
44
C
195 206Right-handed alpha
Helix 45
45
C
209 218Right-handed alpha
Helix 46
46
C
219 222Right-handed 310
Helix 47
47
C
226 246Right-handed alpha
Helix 48
48
E
79 85Right-handed alpha
Helix 49
49
E
86 91Right-handed 310
Helix 50
50
E
116 136Right-handed alpha
Helix 51
51
E
137 140Right-handed 310
Helix 52
52
E
148 153Right-handed alpha
Helix 53
53
E
155 160Right-handed alpha
Helix 54
54
E
167 172Right-handed alpha
Helix 55
55
E
174 185Right-handed alpha
Helix 56
56
E
196 200Right-handed 310
Helix 57
57
E
215 228Right-handed alpha
Helix 58
58
E
242 246Right-handed 310
Helix 59
59
E
256 271Right-handed alpha
Helix 60
60
E
275 282Right-handed alpha
Helix 61
61
E
288 293Right-handed alpha
Helix 62
62
E
297 306Right-handed alpha
Helix 63
63
E
308 322Right-handed alpha
Helix 64
64
E
339 354Right-handed alpha
Helix 65
65
E
416 420Right-handed 310
Helix 66
66
E
422 427Right-handed alpha
Helix 67
67
E
441 446Right-handed alpha
Helix 68
68
E
448 459Right-handed alpha
Helix 69
69
E
470 475Right-handed alpha
Helix 70
70
E
484 488Right-handed 310
Helix 71
71
E
517 528Right-handed alpha
Helix 72
72
E
539 549Right-handed alpha
Helix 73
73
E
554 562Right-handed alpha
Helix 74
74
E
571 577Right-handed alpha
Helix 75
75
E
593 598Right-handed alpha
Helix 76
76
E
630 635Right-handed 310
Helix 77
77
E
637 644Right-handed alpha
Helix 78
78
E
652 659Right-handed alpha
Helix 79
79
E
715 720Right-handed alpha
Helix 80
80
E
751 758Right-handed alpha
Helix 81
81
F
17 27Right-handed alpha
Helix 82
82
F
45 49Right-handed 310
Helix 83
83
F
94 100Right-handed alpha
Helix 84
84
F
119 125Right-handed alpha
Helix 85
85
F
129 135Right-handed alpha
Helix 86
86
F
150 159Right-handed alpha
Helix 87
87
G
14 40Right-handed alpha
Helix 88
88
G
42 46Right-handed 310
Helix 89
89
G
48 66Right-handed alpha
Helix 90
90
G
69 73Right-handed 310
Helix 91
91
G
74 80Right-handed 310
Helix 92
92
G
86 107Right-handed alpha
Helix 93
93
G
114 136Right-handed alpha
Helix 94
94
G
146 166Right-handed alpha
Helix 95
95
G
171 189Right-handed alpha
Helix 96
96
G
190 193Right-handed 310
Helix 97
97
G
194 205Right-handed alpha
Helix 98
98
G
206 217Right-handed alpha
Helix 99
99
G
218 221Right-handed 310
Helix 100
100
G
225 245Right-handed alpha
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There are 23 sheets in PDB entry 2VPY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, EA, EB, EC, ED, EE, EF, EG, FA, FB, FC, FD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
62 67anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
112 114anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
141 144parallel
Strand 3
A
435 438parallel
Strand 4
A
462 466parallel
Strand 5
A
479 481parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
231 235parallel
Strand 3
A
202 206parallel
Strand 4
A
326 327parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
588 589parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
501 503anti-parallel
Strand 3
A
563 565anti-parallel
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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 624first strand
Strand 2
A
738 744anti-parallel
Strand 3
A
666 671anti-parallel
Strand 4
A
676 683anti-parallel
Strand 5
A
648 650parallel
Strand 6
A
692 696anti-parallel
Strand 7
A
619 624parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 725first strand
Strand 2
A
732 733anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
4 9anti-parallel
Strand 3
B
175 178parallel
Strand 4
B
162 163anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 57first strand
Strand 2
B
36 43anti-parallel
Strand 3
C
3 5anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
83 85anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
113 115anti-parallel
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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 43first strand
Strand 2
E
52 57anti-parallel
Strand 3
E
62 67anti-parallel
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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 114first strand
Strand 2
E
99 101anti-parallel
Strand 3
E
478 480anti-parallel
Strand 4
E
462 465parallel
Strand 5
E
435 438parallel
Strand 6
E
141 144parallel
Strand 7
E
165 166parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
248 250first strand
Strand 2
E
231 235parallel
Strand 3
E
202 206parallel
Strand 4
E
326 327parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
283 284first strand
Strand 2
E
588 589parallel
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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
490 495first strand
Strand 2
E
501 505anti-parallel
Strand 3
E
564 565anti-parallel
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There are 5 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
619 620first strand
Strand 2
E
738 744anti-parallel
Strand 3
E
666 671anti-parallel
Strand 4
E
676 683anti-parallel
Strand 5
E
648 650parallel
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There are 2 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
724 725first strand
Strand 2
E
732 733anti-parallel
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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
140 144first strand
Strand 2
F
4 8anti-parallel
Strand 3
F
175 177parallel
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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
50 57first strand
Strand 2
F
36 43anti-parallel
Strand 3
G
2 4anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
75 77first strand
Strand 2
F
83 85anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
106 108first strand
Strand 2
F
112 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il