Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQ0 entry

There are 3 chains in PDB entry 2VQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 73ASN 268
B
 GLY 72ASN 268
C
 PRO 56ASN 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2VQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
100 105Right-handed alpha
Helix 2
2
A
105 113Right-handed alpha
Helix 3
3
A
154 161Right-handed alpha
Helix 4
4
A
172 174Right-handed 310
Helix 5
5
A
175 180Right-handed alpha
Helix 6
6
A
196 200Right-handed 310
Helix 7
7
A
209 220Right-handed alpha
Helix 8
8
A
221 224Right-handed 310
Helix 9
9
A
263 267Right-handed 310
Helix 10
10
B
100 105Right-handed alpha
Helix 11
11
B
105 113Right-handed alpha
Helix 12
12
B
154 159Right-handed alpha
Helix 13
13
B
172 174Right-handed 310
Helix 14
14
B
175 180Right-handed alpha
Helix 15
15
B
196 200Right-handed 310
Helix 16
16
B
209 220Right-handed alpha
Helix 17
17
B
221 224Right-handed 310
Helix 18
18
B
263 267Right-handed 310
Helix 19
19
C
100 105Right-handed alpha
Helix 20
20
C
105 114Right-handed alpha
Helix 21
21
C
156 161Right-handed alpha
Helix 22
22
C
172 175Right-handed 310
Helix 23
23
C
176 181Right-handed alpha
Helix 24
24
C
209 220Right-handed alpha
Helix 25
25
C
221 225Right-handed 310
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There are 9 sheets in PDB entry 2VQ0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 88first strand
Strand 2
A
245 261anti-parallel
Strand 3
A
115 129anti-parallel
Strand 4
A
205 206anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 88first strand
Strand 2
A
245 261anti-parallel
Strand 3
A
115 129anti-parallel
Strand 4
A
192 194anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
231 237anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
162 168anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 88first strand
Strand 2
B
245 261anti-parallel
Strand 3
B
115 129anti-parallel
Strand 4
B
205 206anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 88first strand
Strand 2
B
245 261anti-parallel
Strand 3
B
115 129anti-parallel
Strand 4
B
192 195anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 98first strand
Strand 2
B
231 237anti-parallel
Strand 3
B
138 144anti-parallel
Strand 4
B
162 168anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 70first strand
Strand 2
C
74 88anti-parallel
Strand 3
C
245 261anti-parallel
Strand 4
C
115 129anti-parallel
Strand 5
C
205 206anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 70first strand
Strand 2
C
74 88anti-parallel
Strand 3
C
245 261anti-parallel
Strand 4
C
115 129anti-parallel
Strand 5
C
192 194anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 98first strand
Strand 2
C
231 237anti-parallel
Strand 3
C
138 144anti-parallel
Strand 4
C
162 168anti-parallel
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