Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQI entry

There are 2 chains in PDB entry 2VQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 146GLY 637
B
 LEU 146THR 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2VQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
254 258Right-handed 310
Helix 2
2
A
450 460Right-handed alpha
Helix 3
3
A
574 576Right-handed 310
Helix 4
4
B
254 258Right-handed 310
Helix 5
5
B
450 460Right-handed alpha
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There are 5 sheets in PDB entry 2VQI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 50 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 216first strand
Strand 2
A
182 195anti-parallel
Strand 3
A
164 175anti-parallel
Strand 4
A
147 159anti-parallel
Strand 5
A
622 634anti-parallel
Strand 6
A
609 618anti-parallel
Strand 7
A
595 606anti-parallel
Strand 8
A
578 588anti-parallel
Strand 9
A
562 573anti-parallel
Strand 10
A
550 559anti-parallel
Strand 11
A
534 547anti-parallel
Strand 12
A
518 531anti-parallel
Strand 13
A
501 513anti-parallel
Strand 14
A
484 495anti-parallel
Strand 15
A
467 479anti-parallel
Strand 16
A
436 444anti-parallel
Strand 17
A
414 426anti-parallel
Strand 18
A
398 410anti-parallel
Strand 19
A
382 392anti-parallel
Strand 20
A
370 378anti-parallel
Strand 21
A
356 364anti-parallel
Strand 22
A
337 345anti-parallel
Strand 23
A
240 247anti-parallel
Strand 24
A
223 230anti-parallel
Strand 25
A
200 216anti-parallel
Strand 26
B
199 216anti-parallel
Strand 27
B
223 230anti-parallel
Strand 28
B
240 247anti-parallel
Strand 29
B
337 345anti-parallel
Strand 30
B
356 364anti-parallel
Strand 31
B
370 379anti-parallel
Strand 32
B
382 392anti-parallel
Strand 33
B
398 410anti-parallel
Strand 34
B
414 427anti-parallel
Strand 35
B
436 444anti-parallel
Strand 36
B
467 479anti-parallel
Strand 37
B
484 495anti-parallel
Strand 38
B
501 512anti-parallel
Strand 39
B
520 530anti-parallel
Strand 40
B
535 547anti-parallel
Strand 41
B
550 559anti-parallel
Strand 42
B
562 573anti-parallel
Strand 43
B
578 589anti-parallel
Strand 44
B
595 606anti-parallel
Strand 45
B
609 618anti-parallel
Strand 46
B
622 634anti-parallel
Strand 47
B
147 159anti-parallel
Strand 48
B
164 177anti-parallel
Strand 49
B
182 195anti-parallel
Strand 50
B
199 216anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
291 295anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 288first strand
Strand 2
A
272 278anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
317 323anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 268first strand
Strand 2
B
291 295anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 288first strand
Strand 2
B
272 278anti-parallel
Strand 3
B
305 311anti-parallel
Strand 4
B
317 323anti-parallel
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